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Lookup NU author(s): Dr Daniel Swan, Dr Kelly Jackson, Keziah Preston-Fayers, Dr Andreas Werner
Natural antisense transcripts (NATs) are important regulators of gene expression. Recently, a link between antisense transcription and the formation of endo-siRNAs has emerged. We investigated the bi-directionally transcribed Na/phosphate cotransporter gene (Slc34a1) under the aspect of endo-siRNA processing. Mouse Slc34a1 produces an antisense transcript that represents an alternative splice product of the Pfn3 gene located downstream of Slc34a1. The antisense transcript is prominently found in testis and in kidney. Co-expression of in vitro synthesized sense/antisense transcripts in Xenopus oocytes indicated processing of the overlapping transcripts into endo-siRNAs in the nucleus. Truncation experiments revealed that an overlap of at least 29 base-pairs is required to induce processing. We detected endo-siRNAs in mouse tissues that co express Slc34a1 sense/antisense transcripts by northern blotting. The orientation of endo-siRNAs was tissue specific in mouse kidney and testis. In kidney where the Na/phosphate cotransporter fulfils its physiological function endo-siRNAs complementary to the NAT were detected, in testis both orientations were found. Considering the wide spread expression of NATs and the gene silencing potential of endo-siRNAs we hypothesized a genome-wide link between antisense transcription and monoallelic expression. Significant correlation between random imprinting and antisense transcription could indeed be established. Our findings suggest a novel, more general role for NATs in gene regulation.
Author(s): Carlile M, Swan D, Jackson K, Preston-Fayers K, Ballester B, Flicek P, Werner A
Publication type: Article
Publication status: Published
Journal: Nucleic Acids Research
Year: 2009
Volume: 37
Issue: 7
Pages: 2274-2282
Date deposited: 06/04/2010
ISSN (print): 0305-1048
ISSN (electronic): 1362-4954
Publisher: Oxford University Press
URL: http://dx.doi.org/10.1093/nar/gkp088
DOI: 10.1093/nar/gkp088
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