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The Transcription Factor Encyclopedia

Lookup NU author(s): Dr Ralf KistORCiD, Professor Michael Taggart, Emeritus Professor Nick Europe-Finner, Dr Magdalena Karolczak-Bayatti

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Abstract

Here we present the Transcription Factor Encyclopedia (TFe), a new web-based compendium of mini review articles on transcription factors (TFs) that is founded on the principles of open access and collaboration. Our consortium of over 100 researchers has collectively contributed over 130 mini review articles on pertinent human, mouse and rat TFs. Notable features of the TFe website include a high-quality PDF generator and web API for programmatic data retrieval. TFe aims to rapidly educate scientists about the TFs they encounter through the delivery of succinct summaries written and vetted by experts in the field. TFe is available at http://www.cisreg.ca/tfe.


Publication metadata

Author(s): Yusuf D, Butland SL, Swanson MI, Bolotin E, Ticoll A, Cheung WA, Zhang XY, Dickman CT, Fulton DL, Lim JS, Schnabl JM, Ramos OH, Vasseur-Cognet M, de Leeuw CN, Simpson EM, Ryffel GU, Lam EW, Kist R, Wilson MS, Marco-Ferreres R, Brosens JJ, Beccari LL, Bovolenta P, Benayoun BA, Monteiro LJ, Schwenen HD, Grontved L, Wederell E, Mandrup S, Veitia RA, Chakravarthy H, Hoodless PA, Mancarelli M, Torbett BE, Banham AH, Reddy SP, Cullum RL, Liedtke M, Tschan MP, Vaz M, Rizzino A, Zannini M, Frietze S, Farnham PJ, Eijkelenboom A, Brown PJ, Laperriere D, Leprince D, de Cristofaro T, Prince KL, Putker M, Del Peso L, Camenisch G, Wenger RH, Mikula M, Rozendaal M, Mader S, Ostrowski J, Rhodes SJ, VanRechem C, Boulay G, Olechnowicz SW, Breslin MB, Lan MS, Nanan KK, Wegner M, Hou J, Mullen RD, Colvin SC, Noy PJ, Webb CF, Witek ME, Ferrell S, Daniel JM, Park J, Waldman SA, Peet DJ, Taggart M, Jayaraman PS, Karrich JJ, Blom B, Vesuna F, O'Geen H, Sun Y, Gronostajski RM, Woodcroft MW, Hough MR, Chen E, Europe-Finner N, Karolczak-Bayatti M, Bailey J, Hankinson O, Raman V, Lebrun DP, Biswal S, Harvey CJ, Debruyne JP, Hogenesch JB, Hevner RF, Heligon C, Luo XM, Blank MC, Millen KJ, Sharlin DS, Forrest D, Dahlman-Wright K, Zhao C, Mishima Y, Sinha S, Chakrabarti R, Portales-Casamar E, Sladek FM, Bradley PH, Wasserman WW

Publication type: Article

Publication status: Published

Journal: Genome Biology

Year: 2012

Volume: 13

Issue: 3

Print publication date: 29/03/2012

ISSN (electronic): 1474-7596

Publisher: BioMed Central Ltd.

URL: http://dx.doi.org/10.1186/gb-2012-13-3-r24

DOI: 10.1186/gb-2012-13-3-r24

PubMed id: 22458515


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Funding

Funder referenceFunder name
7th Framework research Program of the European Union
Association pour la recherche contre le cancer (ARC)
Australian Research Council
Canada Foundation for Innovation (CFI)
Canadian Institutes for Health Research
Canadian Institutes of Health Research/MSFHR Strategic Program in Bioinformatics
Cancer Research UK
Centre national de la recherche scientifique (CNRS)
CHAARM in Europe
CIHR
CIHR CGS-M Graduate Award
Clinical Innovator Award from the Flight Attendant Medical Research Institute
Department of Medical and Dental Sciences, University of Birmingham
Dutch Organization for Medical Research (ZonMW)
EFSD
Faculte des Etudes Superieures at Universite de Montreal
Fonds der Chemischen Industrie
Fred Hutchinson Cancer Research Center (FHCRC)
Gene Regulation Bioinformatics Laboratory
Genome British Columbia
GlaxoSmithKline RD Limited
INSERM
Institut Universitaire de France (IUF)
Italian Association for Cancer Research (AIRC)
Italian Ministry of Education, University and Research (MIUR-PRIN)
Leukaemia and Lymphoma Research
Leukemia and Lymphoma Society of Canada
Michael Smith Foundation for Health Research (MSFHR)
Ministerio de Economia y Competitividad (MEyC) in Spain
Montreal Center for Experimental Therapeutics in Cancer
MSFHR
National Health and Medical Research Council of Australia
National Heart, Lung and Blood Institute (NHLBI) at the National Institutes of Health (NIH)
National Institute for General Medical Sciences
Novo Nordisk Foundation
Oklahoma Center for Adult Stem Cell Research
private foundation ONCE
Research Institute at Children's Hospital, New Orleans
Spanish Ministry of Science and Innovation
Swedish Cancer Foundation
Universite Paris Diderot-Paris 7
Wellcome Trust
Action Medical Research
AMN
ANR
BBSRC
Biomedical Research Unit in Reproductive Health
Breast Cancer Campaign
British Columbia Mental Health and Addiction Services
British Heart Foundation
CAM
Canadian Institutes of Health Research
Canadian Institutes of Health Research (CIHR) Frederick Banting
Cancer Research Society
Charles Best Canada Graduate Scholarship Doctoral Award
Child and Family Research Institute
Danish Natural Science Research Council
Deutsche Forschungsgemeinschaft
Dina Gordon-Malkin Ontario Graduate Scholarship in Science and Technology
EU FP7
Faculty of Medical Sciences, Newcastle University
Faculty of Medicine of the University of British Columbia
Fondation pour la recherche medicale (FRM)
Genome Canada
Heart and Stroke Foundation of Canada
Leukaemia and Lymphoma Research and Cancer Research UK
Medical Research Council (MRC) in the United Kingdom
MSFHR Graduate Doctoral Scholarship award
MSFHR Junior Graduate Scholarship
National Cancer Institute
National Sciences and Engineering Research Council of Canada
Nebraska Department of Health
New York State Stem Cell Science (NYSTEM)
Novartis
Pleiades Promoter project
private foundation Fundaluce
private foundation Retina Espana
Research Institute for Children, Children's Hospital New Orleans, LA
Sharon Stewart Trust
Swedish Medical Research Council
Universite Paris-Diderot
University Hospitals Coventry
University of British Columbia Institute of Mental Health
University of British Columbia Office of the Vice President Research
University of British Columbia Work Study Program
Warwickshire NHS Trust
Welcome Trust and Breast Cancer Campaign
044215National Institutes of Health
0608Landsteiner foundation
5RO1 CA097226-03NIH
1U54HG004558National Institutes of Health
31003A_129962/1Swiss National Science Foundation
CA146033National Institutes of Health
CA45250National Institutes of Health
CA95026National Institutes of Health
CAN 2007/1113Swedish Cancer Society (Cancerfonden)
CA75123National Institutes of Health
G0800202Medical Research Council (MRC) in the United Kingdom
ES018998National Institutes of Health (NIH)
ES07141NIEHS
ES11863National Institutes of Health (NIH)
ES11893National Institutes of Health (NIH)
F32HD068113National Institutes of Health (NIH)
GM079239National Institutes of Health
HD42024NIH
HL081205National Institutes of Health
HL091219
HL66109National Institutes of Health (NIH)
MOP 13-147Canadian Institutes for Health Research
GM007377National Institutes of Health
HL 66109National Institutes of Health (NIH)
IP 2010 026770Ministry of Science and Higher Education
K08 CA120349National Institutes of Health (NIH)
P50HL084945National Heart, Lung, and Blood Institute Specialized Centers of Clinically Oriented Research
MOP-84320Canadian Institutes of Health Research
MOP-84320CIHR
MOP-89806CIHR
R01 DK053892National Institutes of Health (NIH)
N N401 071439Ministry of Science and Higher Education
R01 GM088277-01National Institutes of Health
R01 HD42024National Institutes of Health
R01 NS050386NIH
NIH/NIAID R01-AI080564-01National Institutes of Health
R01NS050386National Institutes of Health (NIH)
R21 MH087397National Institutes of Health (NIH)
R24 EY017540
P30 ES003819National Institute on Environmental Health Sciences Center
P50ES015903Center for Childhood Asthma in the Urban Environment
RGPIN/238700-2010Natural Sciences and Engineering Research Council of Canada (NSERC)
T32
R01 MH058869National Institutes of Health
R01CA28868National Institutes of Health (NIH)
R01DK061436National Institutes of Health (NIH)
R01GM069417National Institutes of Health
R01GM084875National Institutes of Health
R01NS044262National Institutes of Health (NIH)
T32GM007183National Institutes of Health (NIH)
U01 ES017154National Institutes of Health
VIDI-917-66-310Netherlands organization for health research and development ZonMW

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