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High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T

Lookup NU author(s): Professor Hans-Peter Klenk

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This work is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).


Abstract

Flavobacterium suncheonense is a member of the family Flavobacteriaceae in the phylum Bacteroidetes. Strain GH29-5(T) (DSM 17707(T)) was isolated from greenhouse soil in Suncheon, South Korea. F. suncheonense GH29-5(T) is part of the Genomic Encyclopedia of Bacteria and Archaea project. The 2,880,663 bp long draft genome consists of 54 scaffolds with 2739 protein-coding genes and 82 RNA genes. The genome of strain GH29-5(T) has 117 genes encoding peptidases but a small number of genes encoding carbohydrate active enzymes (51 CAZymes). Metallo and serine peptidases were found most frequently. Among CAZymes, eight glycoside hydrolase families, nine glycosyl transferase families, two carbohydrate binding module families and four carbohydrate esterase families were identified. Suprisingly, polysaccharides utilization loci (PULs) were not found in strain GH29-5(T). Based on the coherent physiological and genomic characteristics we suggest that F. suncheonense GH29-5(T) feeds rather on proteins than saccharides and lipids.


Publication metadata

Author(s): Tashkandy N, Sabban S, Fakieh M, Meier-Kolthoff JP, Huang SX, Tindall BJ, Rohde M, Baeshen MN, Baeshen NA, Lapidus A, Copeland A, Pillay M, Reddy TBK, Huntemann M, Pati A, Ivanova N, Markowitz V, Woyke T, Goker M, Klenk HP, Kyrpides NC, Hahnke RL

Publication type: Article

Publication status: Published

Journal: Standards in Genomic Sciences

Year: 2016

Volume: 11

Print publication date: 01/01/2016

Online publication date: 16/06/2016

Acceptance date: 23/05/2016

Date deposited: 18/07/2016

ISSN (electronic): 1944-3277

Publisher: BioMed Central Ltd.

URL: http://dx.doi.org/10.1186/s40793-016-0159-5

DOI: 10.1186/s40793-016-0159-5


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