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Micromonospora profundi sp. nov., isolated from deep marine sediment

Lookup NU author(s): Dr Lorena Carro Garcia, Professor Hans-Peter Klenk, Professor Michael Goodfellow

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Abstract

A novel actinobacterial strain, designated DS3010T, was isolated from a Black Sea marine sediment and characterized using a polyphasic approach. The strain was shown to have chemotaxonomic, morphological and phylogenetic properties in line with its classification in the genus Micromonospora. Comparative 16S rRNA gene sequence studies showed that the strain was most closely related to the type strains of Micromonospora saelicesensis (99.5 %), Micromonospora chokoriensis (99.4 %) and Micromonospora violae (99.3 %). Similarly, a corresponding analysis based on partial gyrB gene sequences showed that it formed a distinct phyletic branch in a subclade that included the type strains of Micromonospora zamorensis, "Micromonospora zeae", "Micromonospora jinlongensis", M. saelicesensis and Micromonospora lupini. Strain DS3010T was distinguished from its closest phylogenetic neighbours by low levels of DNA-DNA relatedness and by a combination of chemotaxonomic and phenotypic properties. On the basis of these data, it is proposed that the isolate be assigned to the genus Micromonospora as Micromonospora profundi sp. nov. with isolate DS3010T (= DSM 45981T = KCTC 29243T) as the type strain.


Publication metadata

Author(s): Veyisoglu A, Carro L, Cetin D, Guven K, Spröer C, Pötter G, Klenk H-P, Sahin N, Goodfellow M

Publication type: Article

Publication status: Published

Journal: International Journal of Systematic and Evolutionary Microbiology

Year: 2016

Volume: 66

Pages: 4735-4743

Print publication date: 01/11/2016

Online publication date: 11/08/2016

Acceptance date: 11/08/2016

ISSN (print): 1466-5026

ISSN (electronic): 1466-5034

Publisher: Microbiology Society

URL: http://dx.doi.org/10.1099/ijsem.0.001419

DOI: 10.1099/ijsem.0.001419


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