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Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software

Lookup NU author(s): Professor Hans-Peter Klenk

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Abstract

Report on an extensive metagenome benchmark data sets fromnewly sequenced genomes of ~700 microbial isolates and 600circular elements that were distinct from strains, species, generaor orders represented by public genomes during the CAMI challenge


Publication metadata

Author(s): Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge JA, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, Blood PD, Gurevich A, Bai Y, Turaev D, DeMaere MZ, Chikhi R, Nagarajan N, Quince C, Meyer F, Balvociute M, Hansen LH, Sorensen SJ, Chia BKH, Denis B, Froula JL, Wang Z, Egan R, Kang DD, Cook JJ, Deltel C, Beckstette M, Lemaitre C, Peterlongo P, Rizk G, Lavenier D, Wu YW, Singer SW, Jain C, Strous M, Klingenberg H, Meinicke P, Barton MD, Lingner T, Lin HH, Liao YC, Silva GGZ, Cuevas DA, Edwards RA, Saha S, Piro VC, Renard BY, Pop M, Klenk HP, Göker M, Kyrpides NC, Woyke T, Vorholt JA, Schulze-Lefert P, Rubin EM, Darling AE, Rattei T, McHardy AC

Publication type: Article

Publication status: Published

Journal: Nature Methods

Year: 2017

Volume: 14

Issue: 11

Pages: 1063–1071

Print publication date: 14/11/2017

Online publication date: 02/10/2017

Acceptance date: 25/08/2017

Date deposited: 15/05/2018

ISSN (print): 1548-7091

ISSN (electronic): 1548-7105

Publisher: Nature Publishing Group

URL: https://doi.org/10.1038/nmeth.4458

DOI: 10.1038/nmeth.4458

PubMed id: 28967888


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