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Interrogating Cooperative Interactions of Transcription Factors with Composite DNA Elements Using Gold Nanoparticles

Lookup NU author(s): Dr Yen Nee Tan

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Abstract

We have developed a colorimetric assay using gold nanoparticles (AuNPs) to assess the cooperative binding interactions between two transcription factors related to breast cancer development, i.e., estrogen receptor (ER) and specificity protein 1 (Sp1), with composite DNA elements. The composite DNA contains an estrogen response element (ERE) half-site and Sp1/GC-rich binding sites with a four nucleotides spacer. The assay design was conceptualised based on our previous findings that the size of protein-DNA complex is the determining factor to stabilize citrate anion-capped AuNPs from salt-induced aggregation, demonstrated using binary ER-ERE complexes. In this study, we have further proven that this concept is effective for detecting ternary protein-DNA complex of ER/Sp1-DNA, where the multiprotein-DNA complexes foster a better particle stabilization effect than the ER-DNA complex and/or protein (ER or Sp1) alone due predominantly to their distinct size differences. Based on the particle size and/or interparticle-distance dependent color and UV-vis spectroscopic properties of AuNPs, the formation of a ternary complex between ERα, Sp1, and the half-ERE/Sp1 composite element in the promoter A of the human PR gene can be detected. With this assay, we have also confirmed the cooperative binding of ERβ with Sp1, which has been less well characterized before in term of their cooperative effect in estrogen regulation. This homogenous 'mix-and-test' AuNPs assay is easy to use that can facilitate further understanding on how ER and Sp1 influence and activate gene transcription by forming cooperative binding compound to DNA, a key aspect in breast cancer biology.


Publication metadata

Author(s): Tan YN, Lai AJ, Su X

Publication type: Article

Publication status: Published

Journal: Science of Advanced Materials

Year: 2014

Volume: 6

Issue: 7

Pages: 1460-1466

Online publication date: 01/07/2014

Acceptance date: 01/07/2014

ISSN (print): 1947-2935

ISSN (electronic): 1947-2943

Publisher: American Scientific Publishers

URL: https://doi.org/10.1166/sam.2014.1820

DOI: 10.1166/sam.2014.1820


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