Toggle Main Menu Toggle Search

Open Access padlockePrints

Whole genome sequence of dermacoccus abyssi MT1.1 isolated from the challenger deep of the mariana trench reveals phenazine biosynthesis locus and environmental adaptation factors

Lookup NU author(s): Dr Imen Nouioui, Professor Michael Goodfellow

Downloads


Licence

This work is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).


Abstract

© 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).Dermacoccus abyssi strain MT1.1T is a piezotolerant actinobacterium that was isolated from Mariana Trench sediment collected at a depth of 10898 m. The organism was found to produce ten dermacozines (A-J) that belonged to a new phenazine family and which displayed various biological activities such as radical scavenging and cytotoxicity. Here, we report on the isolation and identification of a new dermacozine compound, dermacozine M, the chemical structure of which was determined using 1D and 2D-NMR, and high resolution MS. A whole genome sequence of the strain contained six secondary metabolite-biosynthetic gene clusters (BGCs), including one responsible for the biosynthesis of a family of phenazine compounds. A pathway leading to the biosynthesis of dermacozines is proposed. Bioinformatic analyses of key stress-related genes provide an insight into how the organism adapted to the environmental conditions that prevail in the deep-sea.


Publication metadata

Author(s): Abdel-Mageed WM, Juhasz B, Lehri B, Alqahtani AS, Nouioui I, Pech-Puch D, Tabudravu JN, Goodfellow M, Rodriguez J, Jaspars M, Karlyshev AV

Publication type: Article

Publication status: Published

Journal: Marine Drugs

Year: 2020

Volume: 18

Issue: 3

Online publication date: 25/02/2020

Acceptance date: 21/02/2020

Date deposited: 30/03/2020

ISSN (print): 1660-3397

ISSN (electronic): 1660-3397

Publisher: MDPI AG

URL: https://doi.org/10.3390/md18030131

DOI: 10.3390/md18030131

PubMed id: 32106586


Altmetrics

Altmetrics provided by Altmetric


Share