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The SIB Swiss Institute of bioinformatics' resources: Focus on curated databases

Lookup NU author(s): Dr Ana ViñuelaORCiD

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Abstract

© The Author(s) 2015.The SIB Swiss Institute of Bioinformatics (www. isb-sib.ch) provides world-class bioinformatics databases, software tools, services and training to the international life science community in academia and industry. These solutions allow life scientists to turn the exponentially growing amount of data into knowledge. Here, we provide an overview of SIB's resources and competence areas, with a strong focus on curated databases and SIB's most popular and widely used resources. In particular, SIB's Bioinformatics resource portal ExPASy features over 150 resources, including UniProtKB/Swiss-Prot, ENZYME, PROSITE, neXtProt, STRING, UniCarbKB, SugarBindDB, SwissRegulon, EPD, arrayMap, Bgee, SWISS-MODEL Repository, OMA, OrthoDB and other databases, which are briefly described in this article.


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Author(s): Bultet LA, Aguilar-Rodriguez J, Ahrens CH, Ahrne EL, Ai N, Aimo L, Akalin A, Aleksiev T, Alocci D, Altenhoff A, Alves I, Ambrosini G, Pedone PA, Angelino P, Anisimova M, Appel R, Argoud-Puy G, Arnold K, Arpat B, Artimo P, Ascencao K, Auchincloss A, Axelsen K, Gerritsen VB, Bairoch A, Bansal P, Baratin D, Barbato A, Barbie V, Barras D, Barreiro M, Barret S, Bastian F, Neto TB, Baudis M, Beaudoing E, Beckmann JS, Bekkar AK, Ben Hamida Cammoun L, Benmohammed S, Bernard M, Bertelli C, Bertoni M, Bienert S, Bignucolo O, Bilbao A, Bilican A, Blank D, Blatter M-C, Blum L, Bocquet J, Boeckmann B, Bolleman JT, Bordoli L, Bosshard L, Bouchet G, Bougueleret L, Boutet E, Bovigny C, Bratulic S, Breuza L, Bridge AJ, Britan A, Brito F, Frazao JB, Bruggmann R, Bucher P, Burdet F, Burger L, Cabello EM, Gomez RMC, Calderon S, Cannarozzi G, Carl S, Casas CC, Catherinet S, Perier RC, Charpilloz C, Chaskar PD, Chen W, Pepe AC, Chopard B, Chu HY, Civic N, Claassen M, Clottu S, Colombo M, Cosandier I, Coudert E, Crespo I, Creus M, Cuche B, Cuendet MA, Cusin I, Daga N, Daina A, Dauvillier JO, David F, Davydov I, De Sa Ricca Manadelo Ferreira M, De Beer T, De Castro E, De Santana C, Delafontaine J, Delorenzi M, Delucinge-Vivier C, Demirel O, Derham R, Dermitzakis EM, Dib L, Diene S, Dilek N, Dilmi J, Domagalski MJ, Dorier J, Dornevil D, Dousse A, Dreos R, Duchen P, Roggli PD, Duperret ID, Durinx C, Duvaud S, Engler R, Erkek S, Lopez PE, Estreicher A, Excoffier L, Fabbretti R, Falcone J-L, Falquet L, Famiglietti ML, Ferreira A-M, Feuermann M, Filliettaz M, Flegel V, Foucal A, Franceschini A, Fucile G, Gaidatzis D, Garcia V, Gasteiger E, Gateau A, Gatti L, Gaudet P, Gaudinat A, Gehant S, Gfeller D, Gharib WH, Ghraichy M, Gidoin C, Gil M, Gleizes A, Gobeill J, Gonnet G, Gos A, Gotz L, Gouy A, Grbic D, Groux R, Gruaz-Gumowski N, Grun D, Gschwind A, Guex N, Gupta S, Getaz M, Haake D, Haas J, Hatzimanikatis V, Heckel G, Gardiol DFH, Hinard V, Hinz U, Homicsko K, Horlacher O, Hosseini S-R, Hotz H-R, Hulo C, Hundsrucker C, Ibberson M, Ilmjarv S, Ioannidis V, Ioannidis P, Iseli C, Ivanek R, Iwaszkiewicz J, Jacquet P, Jacquot M, Jagannathan V, Jan M, Jensen J, Johansson MU, Johner N, Jungo F, Junier T, Kahraman A, Katsantoni M, Keller G, Kerhornou A, Khalid F, Klingbiel D, Komljenovic A, Kriventseva E, Kryuchkova N, Kumar S, Kutalik Z, Kuznetsov D, Kuzyakiv R, Lane L, Lara V, Ledesma L, Leleu M, Lemercier P, Lew D, Lieberherr D, Liechti R, Lisacek F, Lischer H, Litsios G, Liu J, Lombardot T, Mace A, Maffioletti S, Mahi M-A, Maiolo M, Majjigapu SR, Malmstrom L, Mangold V, Marek D, Mariethoz J, Marin R, Martin O, Martin X, Martin-Campos T, Mary C, Masclaux F, Masson P, Meier C, Messina A, Lenoir MM, Meyer X, Michel P-A, Michielin O, Milanese A, Missiaglia E, Perez JM, Caria VM, Moret P, Moretti S, Morgat A, Mottaz A, Mottin L, Mouscaz Y, Mueller M, Murri R, Mylonas R, Neuenschwander S, Nikitin F, Niknejad A, Nouspikel N, Nso LN, Okoniewski M, Omasits U, Paccaud 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Sundaram S, Szklarczyk D, Ovenyi PS, Tegenfeldt F, Teixeira D, Tellenbach S, Smith AAT, Tognolli M, Topolsky I, Van Du Tran T, Tsantoulis P, Tzika AC, Agote AU, Van Nimwegen E, Von Mering C, Varadarajan A, Veranneman M, Verbregue L, Veuthey A-L, Vishnyakova D, Vyas R, Wagner A, Walther D, Wan HW, Wang M, Waterhouse R, Waterhouse A, Wicki A, Wigger L, Wirapati P, Witschi U, Wyder S, Wyler K, Wuthrich D, Xenarios I, Yamada K, Yan Z, Yasrebi H, Zahn M, Zangger N, Zdobnov E, Zerzion D, Zoete V, Zoller S, Abriata L, Aebischer T, Akhmedov M, Filho AAM, Andreozzi S, Appel N, Armand F, Arribas A, Asgari S, Ataman M, Audagnotto M, Aydin D, Bady P, Bank C, Barac D, Bargeton B, Barido-Sottani J, Barillari C, Bartha I, Bean A, Becker J, Beerenwinkel N, Bellement G, Benedetti F, Bergmann S, Berneche S, Bevers R, Biasse D, Bichsel M, Bieler J, Piccini APB, Do Amaral MB, Bolliger C, Boskova V, Brown A, Bryois J, Buil A, Cannavo R, Cardner M, Carelli FN, Carmona S, Cascione L, Chakrabarti A, Chaturvedi N, Choobdar S, Clivaz C, Constantinescu S, Corre T, Quezada DCC, Croce R, Cuendet A, Cui J, Dainese R, Dal Peraro M, Dallavilla T, De Oliveira L, Delaleu N, Delaneau O, Deplancke B, Dharmarajan L, Diekmann M, Dimitrakopoulos C, Dimitriades-Schmutz B, Dimitrova Y, Dirmeier S, Dobay MP, Dougoud M, Duc J, Dumont G, Du Plessis L, Dorr D, Elfstroem K, Elmer F-J, Ewing GB, Fanaswala I, Fellay J, Feller C, Fengos G, Ferrer A, Fiaux S, Field C, Finci I, Fofonjka A, Fonti G, Fried P, Frochaux M, Fuentes J, Galbusera L, Galimberti M, Garcia-Albornoz M, Garcia-Escudero R, Garieri M, Georgieva L, Ghiurcuta CG, Ghosh S, Gnann A, Gnuegge R, Golumbeanu M, Gomez H, Goudet JO, Gruber AJ, Gruhl F, Guethe S, Guillot E, Guimaraes J, Gumienny RW, Gunawan R, Gustafson K, Gypas F, Hadadi N, Hameri T, Hammer C, Heer F, Heller DM, Hersch M, Hofmann AL, Howald C, Hutter S, Iber D, Irwin K, Jahn K, Jedlinski D, Jethava V, Jorjani H, Julou T, Kaessmann H, Kalantzi A, Kanitz A, Kapopoulou A, Karamasioti E, Karimaddini Z, Keller I, Kiparissides A, Kohler M, Kousathanas A, Kuipers J, Kupczyk P, Kwee I, Kuhnert D, Lakshmanan LN, Lamparter D, Lang B, Laurent S, Laurent S, Leigh D, Lin Y, Lindsay H, Link V, Linnik J, Liphardt T, Liu Y, Loetscher A, Luomi AO, Lykov K, Machlab D, Magnus C, Maillard-Wermelinger A, Malafeev A, Malaspinas A-S, Parera RM, Manesso E, Manukyan L, Mapelli SN, Marbach D, Lopez MJM, Wynn MM, Martin G, Martins AF, Matthes K, Mazza C, McDaid A, Mermet JO, Michos O, Milinkovitch MC, Misios A, Miskovic L, Mitov V, Mitra A, Mittal N, Montazeri H, Moret B, Naef F, Nair N, Nicolas DL, Nicolet S, Noh H, Nowicka M, Oeyaas O, Omidi S, Ongen H, Ormond L, Ottoz D, Panousis N, Gao NP, Modarres HP, Pecerska J, Vieira JP, Pivkin I, Planet E, Cespedes SP, Pradhan R, Prados J, Racko D, Radigois M-F, Rasmussen D, Riba A, Rinn B, Rivoal M, Robinson M, Rossi S, Rudolf F, Rueedi R, Ruscheweyh H-J, Rybinski M, Rzepiela AJ, Sakoparnig T, San Roman Rincon MM, Savoglidis G, Scepanovic P, Schaad O, Schleiss R, Schmich F, Schmidt R, Schulthess S, Schwalie PC, Seifert D, Seijo M, Shao M, Shim H, Singer J, Sobel J, Soh KC, Flitman RS, Soto S, Sousa V, Stadler T, Stasiak A, Stefani A, Steger Y, Stelling J, Stopka A, Stevant I, Sunnaker M, Syed AP, Tamo G, Tanaka S, Theiler G, Thorball CAW, Thurnherr T, Ccenhua MRT, Tidin O, Tokic M, Riera MT, Tomasini M, Tymoshenko S, Ud-Dean M, Urchueguia A, Quintero NV, Vinckenbosch L, Vinuela A, Vollmer J, Voordijk S, Wang J, Wang Z, Warnefors M, Weber LM, Wegmann D, Whitehead E, Wicky A, Widmer L, Ye M, Yerly F, Yeung J, Yordanov P, Zavolan M, Zehnder T, Zhang C, Zhou X, Zisaki A, Zoller B, Zollinger A

Publication type: Article

Publication status: Published

Journal: Nucleic Acids Research

Year: 2016

Volume: 44

Issue: D1

Pages: D27-D37

Print publication date: 04/01/2016

Online publication date: 28/11/2015

Acceptance date: 09/11/2015

ISSN (print): 0305-1048

ISSN (electronic): 1362-4962

Publisher: Oxford University Press

URL: https://doi.org/10.1093/nar/gkv1310

DOI: 10.1093/nar/gkv1310

PubMed id: 26615188


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