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Lookup NU author(s): Krutik PatelORCiD


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TimiRGeN (Time Incorporated miR-mRNA Generation of Networks) is a novel R package which functionally analyses and integrates time course miRNA-mRNA differential expression data. This tool can generate small networks within R or export results into cytoscape or pathvisio for more detailed network construction and hypothesis generation. This tool is created for researchers that wish to dive deep into time series multi-omic datasets. TimiRGeN goes further than many other tools in terms of data reduction. Here, potentially hundreds-of-thousands of potential miRNA-mRNA interactions can be whittled down into a handful of high confidence miRNA-mRNA interactions affecting a signalling pathway, across a time course.

Publication metadata

Programmer(s): Patel K

Publication type: Software

Publication status: Published

Version: 3.15

Year: 2020

Online publication date: 12/11/2020

Publisher: Bioconductor

Place Published: Buffalo, NY


DOI: 10.18129/B9.bioc.TimiRGeN