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Leveraging collateral sensitivity to counteract the evolution of bacteriophage resistance in bacteria

Lookup NU author(s): Professor Waldemar Vollmer

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This work is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).


Abstract

© 2025 The Author(s). mLife published by John Wiley & Sons Australia, Ltd on behalf of Institute of Microbiology, Chinese Academy of Sciences.The escalating antibiotic resistance crisis poses a major global health threat. Bacteriophage therapy offers a promising alternative for combating multidrug-resistant infections. However, bacterial resistance to phages remains a significant hurdle. Innovative strategies are needed to overcome this challenge. In this study, we developed a phage cocktail based on our phage library, consisting of three phages that suppressed phage resistance of carbapenem-resistant hypervirulent Klebsiella pneumoniae (CR-hvKp). This cocktail capitalized on dual instances of collateral sensitivity, thereby constraining the evolution of phage resistance. The first-layered collateral sensitivity arose from overlapping coverage between capsular polysaccharide (CPS) and lipopolysaccharide (LPS), rendering the bacteria resistant to CPS-binding phages but more susceptible to LPS-binding phages. The second-layered collateral sensitivity resulted from an O serotype switch (from O1 to O2), causing resistance to O1 antigen-binding phages but increasing susceptibility to phages that target the O2 antigen. This dual-layered collateral sensitivity phage cocktail effectively mitigated infection caused by CR-hvKp in mice. Our research highlights the importance of the collateral sensitivity mechanism in counteracting the evolution of phage resistance and offers a sophisticated strategy for configuring phage cocktails to eliminate bacterial resistance.


Publication metadata

Author(s): Mu Y, Song Y, Tian X, Ding Z, Yao S, Li Y, Wang C, Wei D, Vollmer W, Zhang G, Feng J

Publication type: Article

Publication status: Published

Journal: mLife

Year: 2025

Volume: 4

Issue: 2

Pages: 143-154

Print publication date: 01/04/2025

Online publication date: 18/03/2025

Acceptance date: 21/12/2024

Date deposited: 09/04/2025

ISSN (print): 2097-1699

ISSN (electronic): 2770-100X

Publisher: John Wiley and Sons Inc

URL: https://doi.org/10.1002/mlf2.70003

DOI: 10.1002/mlf2.70003

Data Access Statement: Genomic sequence data for the phage-resistant mutants of the K. pneumonia Kp067 strain used in this study have been deposited into the National Center for Biotechnology Information (NCBI; https://www.ncbi.nlm.nih.gov/) under the BioProject accession no. PRJNA1100799. The genomic data for the three phages used in this study were deposited into the GenBank with accession no. OR532835 (RCIP0041), OR532796 (RCIP0002), and OR532864 (RCIP0070).


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Funding

Funder referenceFunder name
International Partnership Program of the Chinese Academy of Sciences (grant number 079GJHZ2022033GC)
Science & Technology Fundamental Resources Investigation Program (grant number 2022FY101100)

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