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Improvements in micelle promoted DNA-encoded library synthesis by surfactant optimisation

Lookup NU author(s): Jake Odger, Matt Anderson, Thomas Carton, Professor Mike WaringORCiD

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This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License (CC BY-NC 4.0).


Abstract

DNA-encoded libraries are increasingly important in hit identification at the early stage of the drug discovery process. The approach relies on efficient methods for synthesis of drug-like compounds attached to coding DNA sequences. Many reactions employed for library synthesis are inefficient and result in significant DNA-damage, incomplete conversion and the formation of side products, which compromise the fidelity of the resulting library. We have developed a wide array of reactions that are promoted by the micelle-forming surfactant TPGS-750-M that address these issues and lead to improved efficiency. Here we demonstrate further improvements to key reactions Suzuki-Miyaura coupling, reductive amination and amide coupling by surfactant screening using principal component-based surfactant maps which lead to improved conversion for problematic substrates. This work demonstrates the utility of surfactant maps in reaction optimisation for DNA-encoded library synthesis and leads to further improvements in these important transformations.


Publication metadata

Author(s): Odger J, Anderson MJ, Carton TP, Nguyen B, Foote K, Waring MJ

Publication type: Article

Publication status: Published

Journal: Organic and Biomolecular Chemistry

Year: 2025

Volume: 23

Issue: 28

Pages: 6745-6754

Print publication date: 28/07/2025

Online publication date: 13/06/2025

Acceptance date: 13/06/2025

Date deposited: 26/06/2025

ISSN (print): 1477-0520

ISSN (electronic): 1477-0539

Publisher: Royal Society of Chemistry

URL: https://doi.org/10.1039/D5OB00864F

DOI: 10.1039/D5OB00864F

Data Access Statement: Full supporting data and experimental details of this study are available within the article and the ESI.†


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Funding

Funder referenceFunder name
Cancer Research UK (DRCDDRPGMApr2020 \100002, Newcastle Drug Discovery Unit Programme Grant
EPSRC MoSMed CDT (EP/ S022791/1, studentship awarded to JAO, MJA and TPC)
Exscientia, a wholly owned subsidiary of Recursion (studentship awarded to TPC)
Pharmaron, Inc. (studentship awarded to JAO)

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