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Bayesian inference of reproduction number from epidemiological and genetic data using particle MCMC

Lookup NU author(s): Dr Jere KoskelaORCiD

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This work is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

Publication metadata

Author(s): Gill A, Koskela J, Didelot X, Everitt RG

Publication type: Article

Publication status: Published

Journal: Journal of the Royal Statistical Society, Series C

Year: 2025

Pages: Epub ahead of print

Online publication date: 02/12/2025

Acceptance date: 05/11/2025

Date deposited: 22/12/2025

ISSN (print): 0035-9254

ISSN (electronic): 1467-9876

Publisher: Oxford University Press

URL: https://doi.org/10.1093/jrsssc/qlaf065

DOI: 10.1093/jrsssc/qlaf065

Data Access Statement: The implementation of EpiSky in R is available at https://github.com/alicia-gill/EpiSky. Simulated data and all analyses code is available at https://github.com/alicia-gill/EpiSkyPaperCode. The HIV-1 dataset is from Dennis et al. (2021) and Didelot et al. (2023). The TB dataset is from Eldholm et al. (2015).

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