Toggle Main Menu Toggle Search

Open Access padlockePrints

Identification of novel genes with enriched expression in human intermediate progenitors reveals a key role for CDKN3 in cortical development

Lookup NU author(s): Dr Gavin ClowryORCiD

Downloads


Licence

This work is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).


Abstract

© 2026 The Author(s). The evolutionary expansion of the human neocortex relies on species-specific features of intermediate progenitor cells (IPCs), including enhanced proliferation and neuronal production. The transcriptomic differences in IPCs underlying their differential capacity across species remain elusive. To identify the transcriptional signature of human IPCs (hIPCs), we isolated TBR2-positive IPCs from developing human neocortex. A comparative genome-wide expression analysis of IPC transcriptional profiles from human and mouse outlined genes preferentially expressed in hIPCs encoding key factors of cell signaling, transcriptional regulation, and proliferation. Mutations in several hIPC-specific genes were linked to cortical malformations and brain tumors. Functional experiments involving hIPC-specific overexpression of CDKN3 in developing mouse cortex validated the pivotal role of CDKN3 in IPC proliferation and neurogenesis, and supported its identification as a key determinant of hIPC biogenesis. Our findings offer new insights into the molecular features of hIPCs underlying their capacity to mediate the evolutionary expansion of the human neocortex.


Publication metadata

Author(s): Ulmke PA, Ivanov MN, Nguyen HD, Pham L, Muchamedin A, Alzu'bi A, Veleva LV, Kachovski T, Mao X, Lubieniecki KP, Kovachev E, Clowry GJ, Tonchev AB, Nguyen HP, Tuoc T

Publication type: Article

Publication status: Published

Journal: Stem Cell Reports

Year: 2026

Pages: Epub ahead of print

Online publication date: 09/07/2026

Acceptance date: 11/06/2026

Date deposited: 21/07/2026

ISSN (electronic): 2213-6711

Publisher: Cell Press

URL: https://doi.org/10.1016/j.stemcr.2026.103012

DOI: 10.1016/j.stemcr.2026.103012

Data Access Statement: RNA-seq data have been deposited in the NCBI Sequence Read Archive (SRA) under the BioProject accession number PRJNA1213291. This paper does not report original code. Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.


Altmetrics

Altmetrics provided by Altmetric


Funding

Funder referenceFunder name
F1008N-20, IF-027-22 RUB/FoRUM grants
GRK2862/1/492434978
NextGenerationEU via Bulgarian National Recovery and Resilience Plan, Project #BG-RRP-2.004-0009-C03
TU432/3-1, TU432/6-1 DFG grants

Share