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Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1

Lookup NU author(s): Dr Colin GillespieORCiD, Professor Darren Wilkinson

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This work is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

Abstract

Biological models often contain elements that have inexact numerical values, since they are based on values that are stochastic in nature or data that contains uncertainty. The Systems Biology Markup Language (SBML) Level 3 Core specification does not include an explicit mechanism to include inexact or stochastic values in a model, but it does provide a mechanism for SBML packages to extend the Core specification and add additional syntactic constructs. The SBML Distributions package for SBML Level 3 adds the necessary features to allow models to encode information about the distribution and uncertainty of values underlying a quantity.

Publication metadata

Author(s): Smith LP, Moodie SL, Bergmann FT, Gillespie C, Keating SM, Konig M, Myers CJ, Swat MJ, Wilkinson DJ, Hucka M

Publication type: Article

Publication status: Published

Journal: Journal of Integrative Bioinformatics

Year: 2020

Volume: 17

Issue: 2-3

Online publication date: 20/07/2020

Acceptance date: 17/04/2020

Date deposited: 25/11/2020

ISSN (electronic): 1613-4516

Publisher: Walter de Gruyter GmbH

URL: https://doi.org/10.1515/jib-2020-0018

DOI: 10.1515/jib-2020-0018

PubMed id: 32750035

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