Toggle Main Menu Toggle Search

Open Access padlockePrints

Browsing publications by Professor Darren Wilkinson.

Newcastle AuthorsTitleYearFull text
Aleksandra Svalova
Dr Peter Helm
Dr Dennis Prangle
Dr Mohamed Rouainia
Professor Stephanie Glendinning
et al.
Emulating computer experiments of transport infrastructure slope stability using Gaussian processes and Bayesian inference2021
Dr Clement Lee
Professor Darren Wilkinson
A hierarchical model of non-homogeneous Poisson processes for Twitter retweets2020
Professor Stuart Barr
Dr Stephen Johnson
Dr Xiaodong Ming
Dr Maria-Valasia Peppa
Dr Na Dong
et al.
FLOOD-PREPARED: A NOWCASTING SYSTEM for REAL-TIME IMPACT ADAPTION to SURFACE WATER FLOODING in CITIES2020
Dr Colin Gillespie
Professor Darren Wilkinson
Dr Allyson Lister
Dr Carole Proctor
SBML Level 3: an extensible format for the exchange and reuse of biological models2020
Dr Colin Gillespie
Professor Darren Wilkinson
Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 12020
Professor Darren Wilkinson
A Review of Stochastic Block Models and Extensions for Graph Clustering2019
Dr Oluwole Oyebamiji
Professor Darren Wilkinson
Dr Bowen Li
Dr Paolo Zuliani
Professor Thomas Curtis
et al.
Bayesian emulation and calibration of an individual-based model of microbial communities2019
Dr Valentina Gogulancea
Dr Rebeca Gonzalez-Cabaleiro
Dr Bowen Li
Dr Denis Taniguchi
Dr Jinju Chen
et al.
Individual based model links thermodynamics, chemical speciation and environmental conditions to microbial growth2019
Dr Oluwole Oyebamiji
Professor Darren Wilkinson
Dr Jayathilake Pahala Gedara
Professor Stephen Rushton
Dr Bowen Li
et al.
A Bayesian approach to modelling the impact of hydrodynamic shear stress on biofilm deformation2018
Dr Clement Lee
Dr Andy Garbett
Professor Darren Wilkinson
A network epidemic model for online community commissioning data2018
Lauren Roberts
Peter Michalak
Dr Sarah Heaps
Professor Mike Trenell
Professor Darren Wilkinson
et al.
Automating the placement of time series models for IoT healthcare applications2018
Dr Jonathan Law
Professor Darren Wilkinson
Composable Models for Online Bayesian Analysis of Streaming Data2018
Professor Darren Wilkinson
Professor Thomas Curtis
EBI Metagenomics in 2017: Enriching the analysis of microbial communities, from sequence reads to assemblies2018
Professor Darren Wilkinson
Stochastic Modelling for Systems Biology, Third Edition2018
Dr Jayathilake Pahala Gedara
Dr Prashant Gupta
Dr Bowen Li
Dr Curtis Madsen
Dr Oluwole Oyebamiji
et al.
A mechanistic individual-based model of microbial communities2017
Dr Oluwole Oyebamiji
Professor Darren Wilkinson
Dr Jayathilake Pahala Gedara
Professor Thomas Curtis
Dr Bowen Li
et al.
Gaussian process emulation of an individual-based model simulation of microbial communities2017
Dr Eva-Maria Holstein
Dr Conor Lawless
Dr Andrew Banks
Professor Darren Wilkinson
Professor David Lydall
et al.
Systematic Analysis of the DNA Damage Response Network in Telomere Defective Budding Yeast2017
Jonathan Heydari
Dr Conor Lawless
Professor David Lydall
Professor Darren Wilkinson
Bayesian hierarchical modelling for inferring genetic interactions in yeast2016
Dr Oluwole Oyebamiji
Professor Darren Wilkinson
Statistical emulation as a tool for analysing complex multiscale stochastic biological model outputs2016
Dr Andrew Golightly
Professor Darren Wilkinson
Bayesian inference for Markov jump processes with informative observations2015
Jamie Owen
Professor Darren Wilkinson
Dr Colin Gillespie
Likelihood free inference for Markov processes: a comparison2015
Dr Siddharth Narayanan
Dr Marion Dubarry
Dr Conor Lawless
Dr Andrew Banks
Professor Darren Wilkinson
et al.
Quantitative Fitness Analysis Identifies exo1∆ and Other Suppressors or Enhancers of Telomere Defects in Schizosaccharomyces pombe2015
Jamie Owen
Professor Darren Wilkinson
Dr Colin Gillespie
Scalable inference for Markov processes with intractable likelihoods2015
Professor Darren Wilkinson
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core2015
Dr Howsun Jow
Professor Richard Boys
Professor Darren Wilkinson
Bayesian identification of protein differential expression in multi-group isobaric labelled mass spectrometry data2014
Jonathan Heydari
Dr Conor Lawless
Professor David Lydall
Professor Darren Wilkinson
Fast Bayesian parameter estimation for stochastic logistic growth models2014
Professor Darren Wilkinson
Do simple models lead to generality in ecology?2013
Peter Milner
Dr Colin Gillespie
Professor Darren Wilkinson
Moment closure based parameter inference of stochastic kinetic models2013
Lizzy Andrew
Dr Stephanie Merchan
Dr Conor Lawless
Dr Andrew Banks
Professor Darren Wilkinson
et al.
Pentose Phosphate Pathway Function Affects Tolerance to the G-Quadruplex Binder TMPyP42013
Mark McAuley
Professor Darren Wilkinson
Emeritus Professor Thomas Kirkwood
A whole body mathematical model of cholesterol metabolism and its age associated dysregulation2012
Jochen Weile
Dr Jennifer Hallinan
Dr Simon Cockell
Dr Phillip Lord
Professor Anil Wipat
et al.
Bayesian integration of networks without gold standards2012
Dr Howsun Jow
Professor Richard Boys
Professor Darren Wilkinson
A comparative genomics approach to the identification of QTL candidate genes2011
Dr Guiyuan Lei
Professor Richard Boys
Dr Colin Gillespie
Dr Amanda Greenall
Professor Darren Wilkinson
et al.
Bayesian inference for sparse VAR(1) models, with application to time course microarray data2011
Dr Andrew Golightly
Professor Darren Wilkinson
Bayesian parameter inference for stochastic biochemical network models using particle Markov chain Monte Carlo2011
Dr Allyson Lister
Dr Matthew Pocock
Professor Darren Wilkinson
Controlled vocabularies and semantics in systems biology2011
Dr Allyson Lister
Dr Matthew Pocock
Professor Darren Wilkinson
Controlled vocabularies and semantics in systems biology2011
Jochen Weile
Dr Matthew Pocock
Dr Simon Cockell
Dr Phillip Lord
James Dewar
et al.
Customizable views on semantically integrated networks for systems biology2011
Dr Hsin Yu Chang
Dr Conor Lawless
Dr Stephen Addinall
Morgan Taschuk
Professor Anil Wipat
et al.
Genome-Wide Analysis to Identify Pathways Affecting Telomere-Initiated Senescence in Budding Yeast2011
Dr Colin Gillespie
Professor Darren Wilkinson
Moment closure approximations for stochastic kinetic models with rational rate laws2011
Professor Darren Wilkinson
Parameter inference for stochastic kinetic models of bacterial gene regulation: A Bayesian Approach to Systems Biology2011
Dr Stephen Addinall
Dr Eva-Maria Holstein
Dr Conor Lawless
Dr Min Yu
Dr Kaye Chapman
et al.
Quantitative Fitness Analysis Shows That NMD Proteins and Many Other Protein Complexes Suppress or Enhance Distinct Telomere Cap Defects2011
Professor Darren Wilkinson
Stochastic dynamical systems2011
Professor Darren Wilkinson
Stochastic Modelling for Systems Biology2011
Dr Simon Cockell
Jochen Weile
Dr Phillip Lord
Dmytro Andriychenko
Dr Matthew Pocock
et al.
An integrated dataset for in silico drug discovery2010
Dr Colin Gillespie
Dr Guiyuan Lei
Professor Richard Boys
Dr Amanda Greenall
Professor Darren Wilkinson
et al.
Analysing time course microarray data using Bioconductor: a case study using yeast2 Affymetrix arrays2010
Dr Daniel Henderson
Professor Richard Boys
Professor Darren Wilkinson
Bayesian Calibration of a Stochastic Kinetic Computer Model Using Multiple Data Sources2010
Dr Yuhui Chen
Dr Conor Lawless
Dr Colin Gillespie
Professor Jingyi Wu
Professor Richard Boys
et al.
CaliBayes and BASIS: integrated tools for the calibration, simulation and storage of biological simulation models2010
Dr Conor Lawless
Professor Darren Wilkinson
Dr Stephen Addinall
Professor David Lydall
Colonyzer: automated quantification of micro-organism growth characteristics on solid agar2010
Dr Andrew Golightly
Professor Darren Wilkinson
Discussion to "Particle Markov chain Monte Carlo Methods" by Andrieu, Doucet and Holenstein2010
Dr Daniel Henderson
Professor Richard Boys
Professor Darren Wilkinson
Linking systems biology models to data: a stochastic kinetic model of p53 oscillations2010
Professor Darren Wilkinson
Dr Andrew Golightly
Markov chain Monte Carlo algorithms for SDE parameter estimation2010
Professor Darren Wilkinson
Systems Biology Markup Language (SBML): Language specification for Level 3 Version 1 Core2010
Dr Howsun Jow
Dr Madhuchhanda Bhattacharjee
Professor Richard Boys
Professor Darren Wilkinson
The Integration of Genetic Maps Using Bayesian Inference2010
Mark McAuley
Professor Rose Anne Kenny
Emeritus Professor Thomas Kirkwood
Professor Darren Wilkinson
Veronica Miller
et al.
A mathematical model of aging-related and cortisol induced hippocampal dysfunction2009
Dr Daniel Henderson
Professor Richard Boys
Dr Conor Lawless
Professor Darren Wilkinson
Bayesian Emulation and Calibration of a Stochastic Computer Model of Mitochondrial DNA Deletions in Substantia Nigra Neurons2009
Professor Darren Wilkinson
Stochastic modelling for quantitative description of heterogeneous biological systems2009
Dr Amanda Greenall
Dr Daniel Swan
Dr Heiko Peters
Professor Anil Wipat
Professor Darren Wilkinson
et al.
A genome wide analysis of the response to uncapped telomeres in budding yeast reveals a novel role for the NAD(+) biosynthetic gene BNA2 in chromosome end protection2008
Dr Stephen Addinall
Dawn Downey
Dr Min Yu
Dr Mikhajlo Zubko
James Dewar
et al.
A Genome-wide Suppressor and Enhancer Analysis of cdc13-1 Reveals Varied Cellular Processes Influencing Telomere Capping in Saccharomyces cerevisiae2008
Professor Richard Boys
Professor Darren Wilkinson
Emeritus Professor Thomas Kirkwood
Bayesian inference for a discretely observed stochastic kinetic model2008
Dr Andrew Golightly
Professor Darren Wilkinson
Bayesian inference for nonlinear multivariate diffusion models observed with error2008
Professor Darren Wilkinson
Systems Biology Markup Language (SBML) Level 2: Structures and facilities for model definitions2008
Dr Colin Gillespie
Professor Darren Wilkinson
The SBML discrete stochastic models test suite2008
Professor Darren Wilkinson
Bayesian methods in bioinformatics and computational systems biology2007
Dr Carole Proctor
Professor David Lydall
Professor Richard Boys
Dr Colin Gillespie
Dr Daryl Shanley
et al.
Modelling the checkpoint response to telomere uncapping in budding yeast2007
Dr Colin Gillespie
Professor Darren Wilkinson
Dr Daryl Shanley
Dr Carole Proctor
Professor Richard Boys
et al.
BASIS: an internet resource for network modelling.2006
Dr Andrew Golightly
Professor Darren Wilkinson
Bayesian sequential inference for nonlinear multivariate diffusions2006
Dr Andrew Golightly
Professor Darren Wilkinson
Bayesian sequential inference for stochastic kinetic biochemical network models2006
Emeritus Professor Thomas Kirkwood
Professor Richard Boys
Dr Colin Gillespie
Dr John Proctor
Dr Daryl Shanley
et al.
Computer modeling in the study of aging2006
Professor Darren Wilkinson
Stochastic Modelling for Systems Biology2006
Dr Colin Gillespie
Professor Darren Wilkinson
Dr Carole Proctor
Dr Daryl Shanley
Professor Richard Boys
et al.
Tools for the SBML community2006
Dr Andrew Golightly
Professor Darren Wilkinson
Bayesian inference for stochastic kinetic models using a diffusion approximation2005
Emeritus Professor Thomas Kirkwood
Professor Richard Boys
Dr Colin Gillespie
Dr John Proctor
Dr Daryl Shanley
et al.
Computer Modeling in the Study of Aging2005
Dr Carole Proctor
Professor Richard Boys
Dr Colin Gillespie
Dr Daryl Shanley
Professor Darren Wilkinson
et al.
Modelling the actions of chaperones and their role in ageing2005
Professor Darren Wilkinson
Parallel Bayesian Computation2005
Dr Colin Gillespie
Dr Carole Proctor
Dr Daryl Shanley
Professor Darren Wilkinson
Professor Richard Boys
et al.
Web-services for the biology community: the BASIS project2005
Dr Colin Gillespie
Dr Carole Proctor
Professor Richard Boys
Dr Daryl Shanley
Professor Darren Wilkinson
et al.
A mathematical model of ageing in yeast2004
Professor Darren Wilkinson
Stephen Yeung
A sparse matrix approach to Bayesian computation in large linear models2004
Professor Darren Wilkinson
Discussion to Papaspiliopoulos, O., Roberts, G. O. and Skold, M., 'Non-centered parameterisation for hierarchical models and data augmentation'2003
Linda Garside
Professor Darren Wilkinson
Dynamic lattice-Markov spatio-temporal models for environmental data2003
Linda Garside
Professor Darren Wilkinson
Dynamic lattice-Markov spatio-temporal models for environmental data2003
Emeritus Professor Thomas Kirkwood
Professor Richard Boys
Dr Colin Gillespie
Dr Carole Proctor
Dr Daryl Shanley
et al.
Towards an e-biology of ageing: Integrating theory and data2003
Professor Darren Wilkinson
Stephen Yeung
Conditional simulation from highly structured Gaussian systems, with application to blocking-MCMC for the Bayesian analysis of very large linear models2002
Professor Darren Wilkinson
Restricted prior inference for complex uncertainty structures2001
Professor Darren Wilkinson
Bayes linear analysis for graphical models: The geometric approach to local computation and interpretive graphics2000
Professor Richard Boys
Dr Daniel Henderson
Professor Darren Wilkinson
Detecting homogeneous segments in DNA sequences by using hidden Markov models2000
Professor Kevin Glazebrook
Professor Darren Wilkinson
Index-based policies for discounted multi-armed bandits on parallel machines2000
Professor Darren Wilkinson
Multivariate DLMs for Forecasting Financial Time series, with Application to the Management of Portfolios2000