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Lookup NU author(s): Esther Fernández-SimónORCiD, Rasya Gokul Nath, Adrienne Unsworth, Dr Marianela Schiava, Professor Giorgio TascaORCiD, Dr Rachel Queen, Daniel CoxORCiD, Professor Jordi Diaz ManeraORCiD
This work is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).
Copyright © 2024 Fernández-Simón, Piñol-Jurado, Gokul-Nath, Unsworth, Alonso-Pérez, Schiava, Nascimento, Tasca, Queen, Cox, Suarez-Calvet and Díaz-Manera.Background: Duchenne muscular dystrophy is a genetic disease produced by mutations in the dystrophin gene characterized by early onset muscle weakness leading to severe and irreversible disability. Muscle degeneration involves a complex interplay between multiple cell lineages spatially located within areas of damage, termed the degenerative niche, including inflammatory cells, satellite cells (SCs) and fibro-adipogenic precursor cells (FAPs). FAPs are mesenchymal stem cell which have a pivotal role in muscle homeostasis as they can either promote muscle regeneration or contribute to muscle degeneration by expanding fibrotic and fatty tissue. Although it has been described that FAPs could have a different behavior in DMD patients than in healthy controls, the molecular pathways regulating their function as well as their gene expression profile are unknown. Methods: We used single-cell RNA sequencing (scRNAseq) with 10X Genomics and Illumina technology to elucidate the differences in the transcriptional profile of isolated FAPs from healthy and DMD patients. Results: Gene signatures in FAPs from both groups revealed transcriptional differences. Seurat analysis categorized cell clusters as proliferative FAPs, regulatory FAPs, inflammatory FAPs, and myofibroblasts. Differentially expressed genes (DEGs) between healthy and DMD FAPs included upregulated genes CHI3L1, EFEMP1, MFAP5, and TGFBR2 in DMD. Functional analysis highlighted distinctions in system development, wound healing, and cytoskeletal organization in control FAPs, while extracellular organization, degradation, and collagen degradation were upregulated in DMD FAPs. Validation of DEGs in additional samples (n = 9) using qPCR reinforced the specific impact of pathological settings on FAP heterogeneity, reflecting their distinct contribution to fibro or fatty degeneration in vivo. Conclusion: Using the single-cell RNA seq from human samples provide new opportunities to study cellular coordination to further understand the regulation of muscle homeostasis and degeneration that occurs in muscular dystrophies.
Author(s): Fernandez-Simon E, Pinol-Jurado P, Gokul-Nath R, Unsworth A, Alonso-Perez J, Schiava M, Nascimento A, Tasca G, Queen R, Cox D, Suarez-Calvet X, Diaz-Manera J
Publication type: Article
Publication status: Published
Journal: Frontiers in Cell and Developmental Biology
Year: 2024
Volume: 12
Online publication date: 09/07/2024
Acceptance date: 03/06/2024
Date deposited: 05/08/2024
ISSN (electronic): 2296-634X
Publisher: Frontiers Media SA
URL: https://doi.org/10.3389/fcell.2024.1399319
DOI: 10.3389/fcell.2024.1399319
Data Access Statement: The data presented in the study are deposited in the Single cell Broadinstitute.org repository, accession number SCP2678, available at: https://singlecell.broadinstitute.org/single_cell/study/SCP2678/single-cell-rna-sequencing-of-human-faps.
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