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One-step nanoscale expansion microscopy reveals individual protein shapes

Lookup NU author(s): Professor Tiago OuteiroORCiD

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This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (CC BY-NC-ND).


Abstract

© The Author(s) 2024.The attainable resolution of fluorescence microscopy has reached the subnanometer range, but this technique still fails to image the morphology of single proteins or small molecular complexes. Here, we expand the specimens at least tenfold, label them with conventional fluorophores and image them with conventional light microscopes, acquiring videos in which we analyze fluorescence fluctuations. One-step nanoscale expansion (ONE) microscopy enables the visualization of the shapes of individual membrane and soluble proteins, achieving around 1-nm resolution. We show that conformational changes are readily observable, such as those undergone by the ~17-kDa protein calmodulin upon Ca2+ binding. ONE is also applied to clinical samples, analyzing the morphology of protein aggregates in cerebrospinal fluid from persons with Parkinson disease, potentially aiding disease diagnosis. This technology bridges the gap between high-resolution structural biology techniques and light microscopy, providing new avenues for discoveries in biology and medicine.


Publication metadata

Author(s): Shaib AH, Chouaib AA, Chowdhury R, Altendorf J, Mihaylov D, Zhang C, Krah D, Imani V, Spencer RKW, Georgiev SV, Mougios N, Monga M, Reshetniak S, Mimoso T, Chen H, Fatehbasharzad P, Crzan D, Saal K-A, Alawieh MM, Alawar N, Eilts J, Kang J, Soleimani A, Muller M, Pape C, Alvarez L, Trenkwalder C, Mollenhauer B, Outeiro TF, Koster S, Preobraschenski J, Becherer U, Moser T, Boyden ES, Aricescu AR, Sauer M, Opazo F, Rizzoli SO

Publication type: Article

Publication status: Published

Journal: Nature Biotechnology

Year: 2024

Pages: epub ahead of print

Online publication date: 09/10/2024

Acceptance date: 13/09/2024

Date deposited: 28/10/2024

ISSN (print): 1087-0156

ISSN (electronic): 1546-1696

Publisher: Nature Research

URL: https://doi.org/10.1038/s41587-024-02431-9

DOI: 10.1038/s41587-024-02431-9

Data Access Statement: Image data are available from the corresponding authors on reasonable request. Source data are provided with this paper. https://www.nature.com/articles/s41587-024-02431-9#Sec46 Code availability The ONE platform plugin software (source code) is available from Zenodo (https://doi.org/10.5281/zenodo.13685267)

PubMed id: 39385007


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Funding

Funder referenceFunder name
13N15328/NG-FLIM
835102
964016
DFG
European Union Horizon 2020
European Research Council
EXC 2067/1-390729940
German Ministry for Education and Research

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