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An inherited mitochondrial DNA mutation remodels inflammatory cytokine responses in macrophages and in vivo in mice

Lookup NU author(s): Dr Jim StewartORCiD

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This work is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).


Abstract

Impaired mitochondrial bioenergetics in macrophages promotes hyperinflammatory cytokine responses, but whether inherited mtDNA mutations drive similar phenotypes is unknown. Here, we profiled macrophages harbouring a heteroplasmic mitochondrial tRNAAla mutation (m.5019A>G) to address this question. These macrophages exhibit combined respiratory chain defects, reduced oxidative phosphorylation, disrupted cristae architecture, and compensatory metabolic adaptations in central carbon metabolism. Upon inflammatory activation, m.5019A>G macrophages produce elevated type I interferon (IFN), while exhibiting reduced pro-inflammatory cytokines and oxylipins. Mechanistically, suppression of pro-IL-1β and COX2 requires autocrine IFN-β signalling. IFN-β induction is biphasic: an early TLR4-IRF3 driven phase, and a later response involving mitochondrial nucleic acids and the cGAS-STING pathway. In vivo, lipopolysaccharide (LPS) challenge of m.5019A>G mice results in elevated type I IFN signalling and exacerbated sickness behaviour. These findings reveal that a pathogenic mtDNA mutation promotes an imbalanced innate immune response, which has potential implications for the progression of pathology in mtDNA disease patients.


Publication metadata

Author(s): Marques E, Burr SP, Casey AM, Stopforth RJ, Yu CS, Turner K, Wolf DM, Dilucca M, Paup V, Choudhury SR, Tyrrell VJ, Kramer R, Kanse YM, Pednekar C, Powell CA, Stewart JB, Prudent J, Murphy MP, Minczuk M, O'Donnell V, Bryant CE, Chinnery PF, Kaser A, von Kriegsheim A, Ryan DG

Publication type: Article

Publication status: Published

Journal: Nature Communications

Year: 2025

Volume: 16

Issue: 4

Online publication date: 20/11/2025

Acceptance date: 06/10/2025

Date deposited: 21/11/2025

ISSN (electronic): 2041-1723

Publisher: Nature Publishing Group

URL: https://doi.org/10.1038/s41467-025-65023-4

DOI: 10.1038/s41467-025-65023-4

Data Access Statement: The RNA-sequencing datasets generated in this study have been deposited in Dryad under accession https://doi.org/10.5061/dryad.ksn02v7fn and in ArrayExpress under accession code E-MTAB-15591 (https://www.ebi.ac.uk/biostudies/arrayexpress/studies?query=E-MTAB-15591). The proteomics datasets have been deposited in PRIDE under accession code PXD060284 (https://www.ebi.ac.uk/pride/archive/projects/PXD060284). The raw lipidomics dataset has been deposited in the Cardiff University Research Data Repository (https://doi.org/10.17035/cardiff.30074749), together with the Oxylipin scheduled multiple reaction monitoring (sMRM) method report (https://doi.org/10.5281/zenodo.17078883). The raw metabolomics datasets have been deposited in MassIVE under accession code MSV000099126 (https://doi.org/10.25345/C58C9RH3G). All other data are available in the article and its Supplementary files or from the corresponding author upon request. Source data are provided in this paper.


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Funding

Funder referenceFunder name
A.K. was supported by a Wellcome Trust investigator award (222497/Z/21/Z) and Leona M & Harry B Helmsley Charitable Trust (R-2408-07256)
A.v.K and C.P. were supported by funding from the Wellcome Trust (Multiuser Equipment 208402/Z/17) and a UKRI MRC fellowship (MR/X01293X/1)
C.A.P. and M.M. were supported by core funding from UKRI MRC (MC_UU_00028/3) and the UKRI MRC award (MC_PC_21046) to the National Mouse Genetics Network Mitochondria Cluster (MitoCluster)
D.G.R. was supported by funding from the UKRI MRC (MC_UU_00028) and a Wellcome Trust-Academy of Medical Sciences (AMS) springboard grant (G123514)
J.P. was supported by the UKRI MRC (MC_UU_00028/5)

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