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Glyceraldehyde-3-phosphate dehydrogenase is inhibited by binding of Cu(I) to the essential active site cysteine

Lookup NU author(s): Dr Arnaud Basle, Dr Kevin Waldron

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This work is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).


Abstract

© 2025 The Authors. Copper is an essential micronutrient for bacteria, needed for important copper enzymes such as terminal respiratory oxidases. However, in excess, copper is toxic to bacteria. This toxicity is caused by its ability to bind tightly to proteins through the formation of Cu-Cys and Cu-His bonds. To control toxicity, bacteria have evolved homeostatic systems to safely handle the copper they need while efficiently sequestering and effluxing excess copper ions. We previously found that GapA, the abundant glycolytic glyceraldehyde-3-phosphate dehydrogenase enzyme in the Staphylococcus aureus cytosol, becomes associated with copper within cells cultured in medium containing excess copper. We found that this association of GapA with copper resulted in inhibition of its enzyme activity. Here, we have characterised this binding of copper ions to S. aureus GapA in vitro to determine the mechanism of copper inhibition of GapA. We found that purified recombinant GapA binds a single Cu(I) ion with high affinity. Crystallographic structural determination showed association of this copper ion with two active site residues, Cys151 and His178, known to be important for catalysis. This observation was confirmed by characterisation of mutated variants lacking these residues, which showed reduced ability to bind Cu(I) ions. Finally, we demonstrated that the cytosolic copper metallochaperone, CopZ, exhibits a tighter affinity for Cu(I) and can remove copper from GapA in vitro . Together, our data demonstrate the mechanism by which excess copper binds to the S. aureus GapA enzyme and irreversibly inhibit its activity and how the cellular homeostasis system is capable of resolving this inhibition.


Publication metadata

Author(s): Riboldi GP, Firth SJ, Basle A, Waldron KJ

Publication type: Article

Publication status: Published

Journal: Archives of Biochemistry and Biophysics

Year: 2026

Volume: 776

Print publication date: 01/02/2026

Online publication date: 17/12/2025

Acceptance date: 16/12/2025

Date deposited: 16/01/2026

ISSN (print): 0003-9861

ISSN (electronic): 1096-0384

Publisher: Academic Press Inc.

URL: https://doi.org/10.1016/j.abb.2025.110707

DOI: 10.1016/j.abb.2025.110707

Data Access Statement: X-ray crystallographic structural data has been deposited in the PDB (ID 9T7U). All other underlying raw data is available from the corresponding author on request.

PubMed id: 41419077


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Funding

Funder referenceFunder name
098375/Z/12/ZWellcome Trust
Brazilian Federal Agency for Support and Evaluation of Graduate Education (CAPES), Brazil
MAESTRO grant from the National Science Center (NCN), Poland (2021/42/A/NZ1/00214)
Newcastle University, UK
Science Without Borders scholarship (BEX 2445/13–1)

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