Publications by Dr Tom Nye - ePrints

Browsing publications by Dr Tom Nye.

Newcastle Authors	Title	Year
Dr Naomi Hannaford Dr Sarah Heaps Dr Tom Nye Professor Thomas Curtis Dr Ben Allen et al.	A sparse Bayesian hierarchical vector autoregressive model for microbial dynamics in a wastewater treatment plant	2023
Maryam Garba Dr Tom Nye	Information geometry for phylogenetic trees	2021
Dr Sarah Heaps Dr Tom Nye Professor Richard Boys Dr Svetlana Cherlin Emeritus Professor T. Martin Embley FMedSci FRS et al.	Generalizing rate heterogeneity across sites in statistical phylogenetics	2020
Dr Naomi Hannaford Dr Sarah Heaps Dr Tom Nye Emeritus Professor T. Martin Embley FMedSci FRS	Incorporating compositional heterogeneity into Lie Markov models for phylogenetic inference	2020
Dr Tom Nye	Random walks and Brownian motion on cubical complexes	2020
Maryam Garba Dr Tom Nye Professor Richard Boys	Probabilistic Distances Between Trees	2018
Dr Svetlana Cherlin Dr Sarah Heaps Dr Tom Nye Professor Richard Boys Emeritus Professor T. Martin Embley FMedSci FRS et al.	The effect of nonreversibility on inferring rooted phylogenies	2018
Dr Tom Nye	Principal Component Analysis and the Locus of the Fréchet Mean in the Space of Phylogenetic Trees	2017
Dr Tom Williams Dr Sarah Heaps Dr Svetlana Cherlin Dr Tom Nye Professor Richard Boys et al.	New substitution models for rooting phylogenetic trees	2015
Dr Tom Nye	An Algorithm for Constructing Principal Geodesics in Phylogenetic Treespace	2014
Dr Sarah Heaps Dr Tom Nye Professor Richard Boys Dr Tom Williams Emeritus Professor T. Martin Embley FMedSci FRS et al.	Bayesian modelling of compositional heterogeneity in molecular phylogenetics	2014
Dr Tom Nye Dr Michael White	Diffusion on some simple stratified spaces	2013
Dr Tom Williams Dr Tom Nye Emeritus Professor T. Martin Embley FMedSci FRS	A congruent phylogenomic signal places eukaryotes within the Archaea	2012
Dr Tom Nye	A Variance-Components Model for Distance-Matrix Phylogenetic Reconstruction	2011
Dr Tom Nye	Principal components analysis in the space of phylogenetic trees	2011
Dr Tom Nye	Modelling the evolution of multi-gene families	2009
Dr Tom Nye	Trees of Trees: An Approach to Comparing Multiple Alternative Phylogenies	2008
Dr Tom Nye	A Covariance Matrix Inversion Problem arising from the Construction of Phylogenetic Trees	2007
Dr Tom Nye	A novel algorithm and web-based tool for comparing two alternative phylogenetic trees	2006
Dr Tom Nye	Predicting the Strongest Domain-Domain Contact in Interacting Protein Pairs	2006
Dr Tom Nye	Statistical analysis of domains in interacting protein pairs	2005