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Synergistic 3D, multispectral, and thermal image analysis via supervised machine learning for improved detection of root rot symptoms in hydroponically grown flat-leaf parsley

Lookup NU author(s): Dr Avinash Agarwal, Filipe de Jesus Colwell, Julian Bello-Rodriguez, Dr Sarah Sommer, Professor Thomas HillORCiD, Professor Neil Boonham, Dr Ankush PrasharORCiD

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This work is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).


Abstract

© 2025Root rot in hydroponically grown leafy vegetables is difficult to detect via conventional manual and machine vision-based approaches as symptoms of infection are not clearly visible on the canopy at earlier stages of infection. Hence, the present study investigates the potential of using machine learning for assessing canopy information obtained from multiple imaging platforms synergistically to improve root rot detection. Herein, flat-leaf parsley seedlings were grown in an experimental hydroponic vertical farm and inoculated with Pythium irregulare and Phytophthora nicotianae. Subsequently, the seedlings were imaged via 3D, multispectral, and thermal sensors at various stages of growth to obtain twenty-six image-based plant features. Following a preliminary screening of redundant features via regression analysis, data for seventeen image features associated with morphometric, spectral, and thermal attributes was co-analyzed using supervised machine learning by Support Vector Machines (SVM). Models using all eleven spectral features provided 98 % accuracy compared to 90 % for all five morphometric features and 94 % for canopy temperature alone. Inclusion of temporal data improved model performance by ca. 0.5 %, 1.5 %, and 8 % for spectral, thermal, and morphometric datasets, respectively. Exhaustive feature selection using different SVM kernels and maximum feature thresholds showed that combining features across the three imaging platforms along with temporal information enabled better identification of infected samples (>99 %) with as low as three features in comparison to using considerably more features from individual imaging systems. Hence, fusion of data from multiple imaging systems and using it with temporal information enabled better real-time high-throughput monitoring of root rot.


Publication metadata

Author(s): Agarwal A, de Jesus Colwell F, Bello Rodriguez J, Sommer S, Barman M, Correa Galvis VA, Hill TR, Boonham N, Prashar A

Publication type: Article

Publication status: Published

Journal: Smart Agricultural Technology

Year: 2025

Volume: 12

Print publication date: 01/12/2025

Online publication date: 23/08/2025

Acceptance date: 23/08/2025

Date deposited: 09/09/2025

ISSN (electronic): 2772-3755

Publisher: Elsevier B.V.

URL: https://doi.org/10.1016/j.atech.2025.101364

DOI: 10.1016/j.atech.2025.101364

Data Access Statement: Data will be made available on request.


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Funding

Funder referenceFunder name
Innovate UK (Technology Strategy Board – CR&D) [grant number: TS/V002880/1

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