Professor Neil Boonham
Dr Femke van den Berg
| Appropriate sampling to aid on-farm assessments of the haplotype composition of Zymoseptoria tritici populations | 2024 |
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Dr Dimitrios Petsopoulos
Dr Jordan Cuff
Dr James Kitson
Professor Neil Boonham
Professor Darren Evans
et al. | Identifying archived insect bulk samples using DNA metabarcoding: A case study using the long-term Rothamsted Insect Survey | 2024 |
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Dr Avinash Agarwal
Julian Bello-Rodriguez
Dr Sarah Sommer
Professor Thomas Hill
Professor Neil Boonham
et al. | Monitoring root rot in flat-leaf parsley via machine vision by unsupervised multivariate analysis of morphometric and spectral parameters | 2024 |
|
Dr Alis Prusokiene
Professor Neil Boonham
Dr Adrian Fox
Dr Thomas Howard
| Mottle: Accurate pairwise substitution distance at high divergence through the exploitation of short-read mappers and gradient descent | 2024 |
|
Professor Neil Boonham
| Highly specific qPCR and amplicon sequencing method for detection of quarantine citrus pathogen Phyllosticta citricarpa applicable for air samples | 2023 |
|
Professor Neil Boonham
Ferran Salavert Pamblanco
| Looking beyond Virus Detection in RNA Sequencing Data: Lessons Learned from a Community-Based Effort to Detect Cellular Plant Pathogens and Pests | 2023 |
|
Ferran Salavert Pamblanco
Professor Neil Boonham
| Managing the deluge of newly discovered plant viruses and viroids: an optimized scientific and regulatory framework for their characterization and risk analysis | 2023 |
|
Ines Vazquez Iglesias
Professor Neil Boonham
Dr Ian Adams
| A novel high-throughput sequencing approach reveals the presence of a new virus infecting Rosa: rosa ilarvirus-1 (RIV-1) | 2022 |
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Dr Hollie Pufal
Professor Neil Boonham
| Enhanced Apiaceous Potyvirus Phylogeny, Novel Viruses, and New Country and Host Records from Sequencing Apiaceae Samples | 2022 |
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Professor Neil Boonham
| Historical and recent tomato black ring virus and beet ringspot virus isolate genomes reveal interspecies recombination and plant health regulation inconsistencies | 2022 |
|
Dr Yaiza Gutierrez Vazquez
Dr Ian Adams
Dr Femke van den Berg
Dr Roy Sanderson
Dr Hollie Pufal
et al. | Profiling azole resistant haplotypes within Zymoseptoria tritici populations using nanopore sequencing | 2022 |
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Professor Neil Boonham
| A primer on the analysis of high‐throughput sequencing data for detection of plant viruses | 2021 |
|
Professor Neil Boonham
| Genomics informed design of a suite of real-time PCR assays for the specific detection of each Xylella fastidiosa subspecies | 2021 |
|
Professor Neil Boonham
Dr Ian Adams
| Historical virus isolate collections: An invaluable resource connecting plant virology’s pre-sequencing and post-sequencing eras | 2021 |
|
Dr Nawaporn Onkokesung
Dr Sarah Sommer
Dr Thomas Howard
Dr Alex Laverick
Professor Neil Boonham
et al. | Plant pest surveillance: from satellites to molecules | 2021 |
|
Dr Nawaporn Onkokesung
Professor Neil Boonham
Professor Robert Edwards
| Target-Site and Non-target-Site Resistance Mechanisms Confer Multiple and Cross- Resistance to ALS and ACCase Inhibiting Herbicides in Lolium rigidum From Spain | 2021 |
|
Dr Dimitrios Petsopoulos
Jennifer Bell
Dr James Kitson
Professor Neil Boonham
Professor Darren Evans
et al. | Using network ecology to understand and mitigate long-term insect declines | 2021 |
|
Professor Neil Boonham
| A pond-side test for Guinea worm: Development of a loop-mediated isothermal amplification (LAMP) assay for detection of Dracunculus medinensis | 2020 |
|
Emeritus Professor Steve Juggins
Professor Neil Boonham
| Corrigendum to “Development of a novel metric for evaluating diatom assemblages in rivers using DNA metabarcoding” [Ecol. Indic. (2020) 106725] (Ecological Indicators (2020) 118, (S1470160X20306622), (10.1016/j.ecolind.2020.106725)) | 2020 |
|
Emeritus Professor Steve Juggins
Professor Neil Boonham
| Development of a novel metric for evaluating diatom assemblages in rivers using DNA metabarcoding | 2020 |
|
Professor Neil Boonham
| Biological and Molecular Properties of Wild potato mosaic virus Isolates from Pepino (Solanum muricatum) | 2019 |
|
Dr Ian Adams
Professor Neil Boonham
| Complete coding sequence of Andean potato mottle virus from a 40-year-old sample from Peru | 2019 |
|
Professor Neil Boonham
Dr Ian Adams
| Genomic sequence and host range studies reveal considerable variation within the species Arracacha virus B | 2019 |
|
Ines Vazquez Iglesias
Dr Ian Adams
Jone Santin Azcona
Professor Neil Boonham
| High throughput sequencing and RT-qPCR assay reveal the presence of rose cryptic virus-1 in the United Kingdom | 2019 |
|
Dr Ian Adams
Professor Neil Boonham
| A 33-year-old plant sample contributes the first complete genomic sequence of Potato Virus U | 2018 |
|
Professor Neil Boonham
| A Loop-mediated Isothermal Amplification (LAMP) Assay for Rapid Identification of Bemisia tabaci | 2018 |
|
Professor Neil Boonham
| Application of HTS for Routine Plant Virus Diagnostics: State of the Art and Challenges | 2018 |
|
Professor Neil Boonham
| Complete genome sequence of Potato virus T from Bolivia, obtained from a 33-year-old sample | 2018 |
|
Professor Neil Boonham
| Complete genomic sequence of the potyvirus mashua virus Y, obtained from a 33-year-old mashua (Tropaeaolum tuberosum) sample | 2018 |
|
Dr Sara Franco Ortega
Professor Neil Boonham
| Development of loop-mediated isothermal amplification assays for the detection of seedborne fungal pathogens Fusarium fujikuroi and Magnaporthe oryzae in rice seed | 2018 |
|
Professor Neil Boonham
| Dispersal of harmful fruit fly pests by international trade and a loop-mediated isothermal amplification assay to prevent their introduction | 2018 |
|
Professor Neil Boonham
| From laboratory to point of entry: Development and implementation of a loop-mediated isothermal amplification (LAMP)-based genetic identification system to prevent introduction of quarantine insect species | 2018 |
|
Professor Neil Boonham
| Full-genome sequencing of a virus from a 33-year-old sample demonstrates that Arracacha mottle virus is synonymous with Arracacha virus Y | 2018 |
|
Professor Neil Boonham
| High-Throughput Sequencing Facilitates Characterization of a “Forgotten” Plant Virus: The Case of a Henbane Mosaic Virus Infecting Tomato | 2018 |
|
Professor Neil Boonham
| High-throughput sequencing technologies for plant pest diagnosis: challenges and opportunities | 2018 |
|
Professor Neil Boonham
Erin Lewis
| Needle in a haystack? A comparison of eDNA metabarcoding and targeted qPCR for detection of the great crested newt (Triturus cristatus) | 2018 |
|
Professor Neil Boonham
| Prospects and challenges of environmental DNA (eDNA) monitoring in freshwater ponds | 2018 |
|
Dr Sara Franco Ortega
Professor Neil Boonham
| Rapid detection of Fusarium oxysporum f. sp. lactucae on soil, lettuce seeds and plants using loop-mediated isothermal amplification | 2018 |
|
Professor Giles Budge
Professor Neil Boonham
| Rapid molecular methods for in-field and laboratory identification of the yellow-legged Asian hornet (Vespa velutina nigrithorax) | 2018 |
|
Professor Neil Boonham
Professor Michael Kehoe
| The biology and phylogenetics of potato virus s isolates from the andean region of south America | 2018 |
|
Professor Neil Boonham
| The impact of high throughput sequencing on plant health diagnostics | 2018 |
|
Professor Neil Boonham
| Using high-throughput sequencing in support of a plant health outbreak reveals novel viruses in Ullucus tuberosus (Basellaceae) | 2018 |
|
Professor Neil Boonham
| A TaqMan real-time PCR assay for Rhizoctonia cerealis and its use in wheat and soil | 2017 |
|
Professor Neil Boonham
| Complete sequence and genomic annotation of carrot torradovirus 1 | 2017 |
|
Professor Neil Boonham
| Evaluation and validation of a loop-mediated isothermal amplification test kit for detection of Hymenoscyphus fraxineus | 2017 |
|
Professor Neil Boonham
| First complete genome sequence of Arracacha virus A isolated from a 38-year-old sample from Peru | 2017 |
|
Professor Neil Boonham
| First report of Carrot torradovirus 1 (CaTV1), a member of the Torradovirus genus, infecting carrots in France | 2017 |
|
Professor Neil Boonham
| Investigating the viral causes of internal necrosis in carrot | 2017 |
|
Professor Giles Budge
Professor Neil Boonham
| Microsporidia infection impacts the host cells cycle and reduces cell apoptosis | 2017 |
|
Professor Neil Boonham
| Next generation sequencing for detection and discovery of plant viruses and viroids: Comparison of two approaches | 2017 |
|
Professor Neil Boonham
| The effects of surface structure mutations in Arabidopsis thaliana on the polarization of reflections from virus-infected leaves | 2017 |
|
Rebecca Stafford
Professor Neil Boonham
Professor Rick Mumford
Professor Robert Edwards
| Transcriptome sequencing identifies novel persistent viruses inherbicide resistant wild-grasses | 2017 |
|
Professor Neil Boonham
| Detection and transmission of Carrot torrado virus, a novel putative member of the Torradovirus genus | 2016 |
|
Professor Neil Boonham
| DNA barcoding for biosecurity: case studies from the UK plant protection programme | 2016 |
|
Professor Neil Boonham
| Evidence for different host-dependent functioning of RX against both wild-type and recombinant pepino mosaic virus | 2016 |
|
Professor Neil Boonham
| Fourier transform infra-red spectroscopy using an attenuated total reflection probe to distinguish between Japanese larch, pine and citrus plants in healthy and diseased states | 2016 |
|
Professor Giles Budge
Professor Neil Boonham
| Identifying bacterial predictors of honey bee health | 2016 |
|
Professor Neil Boonham
| Molecular and biological characterisation of two novel pomo-like viruses associated with potato (Solanum tuberosum) fields in Colombia | 2016 |
|
Professor Neil Boonham
| Molecular and biological characterization of Potato mop-top virus (PMTV, Pomovirus) isolates from the potato-growing regions of Colombia | 2016 |
|
Professor Neil Boonham
| The effect of post-harvest storage conditions on the development of black dot (Colletotrichum coccodes) on potato in crops grown for different durations | 2016 |
|
Professor Neil Boonham
| The effects of plant virus infection on polarization reflection from leaves | 2016 |
|
Professor Rick Mumford
Professor Neil Boonham
| The role and challenges of new diagnostic technology in plant biosecurity | 2016 |
|
Professor Neil Boonham
| A pathogenicity determinant maps to the N-terminal coat protein region of the Pepino mosaic virus genome | 2015 |
|
Professor Neil Boonham
| Development of a lateral flow device for in-field detection and evaluation of PCR-based diagnostic methods for Xanthomonas campestris pv. musacearum, the causal agent of banana xanthomonas wilt | 2015 |
|
Professor Neil Boonham
| LAMP assay and rapid sample preparation method for on-site detection of flavescence dorée phytoplasma in grapevine | 2015 |
|
Professor Neil Boonham
| Microarray platform for the detection of a range of plant viruses and viroids | 2015 |
|
Professor Neil Boonham
| Rapid, specific, simple, in-field detection of Xanthomonas campestris pathovar musacearum by loop-mediated isothermal amplification | 2015 |
|
Professor Neil Boonham
| Real-Time LAMP for Chalara fraxinea Diagnosis | 2015 |
|
Professor Neil Boonham
| Carrot yellow leaf virus is associated with carrot internal necrosis | 2014 |
|
Professor Neil Boonham
| First report of maize lethal necrosis disease in Rwanda | 2014 |
|
Professor Neil Boonham
| Genome sequence of vanilla distortion mosaic virus infecting Coriandrum sativum | 2014 |
|
Professor Neil Boonham
| Influence of the length of target DNA overhang proximal to the array surface on discrimination of single-base mismatches on a 25-mer oligonucleotide array | 2014 |
|
Professor Neil Boonham
| Methods in virus diagnostics: From ELISA to next generation sequencing | 2014 |
|
Professor Neil Boonham
| The complete genome sequence of Piper yellow mottle virus (PYMoV) | 2014 |
|
Professor Neil Boonham
| The complete genome sequences of two isolates of potato black ringspot virus and their relationship to other isolates and nepoviruses | 2014 |
|
Professor Neil Boonham
Professor Rick Mumford
| The development of monoclonal antibodies to the secA protein of Cape St. Paul wilt disease phytoplasma and their evaluation as a diagnostic tool | 2014 |
|
Professor Neil Boonham
| Erwinia amylovora loop-mediated isothermal amplification (LAMP) assay for rapid pathogen detection and on-site diagnosis of fire blight | 2013 |
|
Professor Neil Boonham
| A loop-mediated isothermal amplification-based method for confirmation of Guignardia citricarpa in citrus black spot lesions | 2013 |
|
Professor Neil Boonham
| A new quantitative real-time PCR assay for Rhizoctonia solani AG3-PT and the detection of AGs of Rhizoctonia solani associated with potato in soil and tuber samples in Great Britain | 2013 |
|
Professor Neil Boonham
| Complete genome sequence of arracacha virus B: A novel cheravirus | 2013 |
|
Professor Neil Boonham
| Genomics-informed design of loop-mediated isothermal amplification for detection of phytopathogenic Xanthomonas arboricola pv. pruni at the intraspecific level | 2013 |
|
Professor Neil Boonham
| High throughput real-time RT-PCR assays for specific detection of cassava brown streak disease causal viruses, and their application to testing of planting material | 2013 |
|
Professor Neil Boonham
| Loop-mediated isothermal amplification for rapid detection of the causal agents of cassava brown streak disease | 2013 |
|
Professor Neil Boonham
| The plant viruses and viroids database and collections of Q-bank | 2013 |
|
Professor Neil Boonham
| Use of loop-mediated isothermal ampliflcation for detection of Ophiostoma clavatum, the primary blue stain fungus associated with Ips acuminatus | 2013 |
|
Professor Rick Mumford
Professor Neil Boonham
| Use of next-generation sequencing for the identification and characterization of Maize chlorotic mottle virus and Sugarcane mosaic virus causing maize lethal necrosis in kenya | 2013 |
|
Professor Giles Budge
Professor Neil Boonham
| A new large scale soil DNA extraction procedure and real-time PCR assay for the detection of Sclerotium cepivorum in soil | 2012 |
|
Professor Neil Boonham
| A review of pest surveillance techniques for detecting quarantine pests in Europe | 2012 |
|
Professor Neil Boonham
| Co-infection with Cucumber vein yellowing virus and Cucurbit yellow stunting disorder virus leading to synergism in cucumber | 2012 |
|
Professor Neil Boonham
| First record of the Q Biotype of the sweetpotato whitefly, Bemisia tabaci, intercepted in the UK | 2012 |
|
Professor Giles Budge
Professor Neil Boonham
| Detection of honey bee (Apis mellifera) viruses with an oligonucleotide microarray | 2011 |
|
Professor Neil Boonham
| Development of a real-time PCR assay for detection of Phytophthora kernoviae and comparison of this method with a conventional culturing technique | 2011 |
|
Professor Neil Boonham
| Use of a real-time LAMP isothermal assay for detecting 16SrII and XII phytoplasmas in fruit and weeds of the Ethiopian Rift Valley | 2011 |
|
Professor Neil Boonham
| Aggressive and mild Potato virus Y isolates trigger different specific responses in susceptible potato plants | 2010 |
|
Professor Neil Boonham
| Development and evaluation of a one-hour DNA extraction and loop-mediated isothermal amplification assay for rapid detection of phytoplasmas | 2010 |
|
Professor Giles Budge
Professor Neil Boonham
| Characterization and origin of infection of Rhizoctonia solani associated with Brassica oleracea crops in the UK | 2009 |
|
Professor Neil Boonham
Professor Giles Budge
| Development of protocols for detection of Colletotrichum acutatum and monitoring of strawberry anthracnose using real-time PCR | 2009 |
|
Professor Giles Budge
Professor Neil Boonham
| Molecular tools to investigate Rhizoctonia solani distribution in soil | 2009 |
|
Professor Neil Boonham
Professor Rick Mumford
| Exploiting generic platform technologies for the detection and identification of plant pathogens | 2008 |
|
Professor Giles Budge
Professor Neil Boonham
| Risk assessment procedure for Cucumber Vein Yellowing Virus (CVYV) and Cucurbit Yellow Stunting Disorder Virus (CYSDV) using a real time RT-PCR assay - study of virus levels in the vector Bemisia tabaci | 2008 |
|
Professor Giles Budge
Professor Neil Boonham
| RNA2 of Soil-borne cereal mosaic virus is detectable in plants of winter wheat grown from infected seeds | 2008 |
|
Professor Giles Budge
Professor Neil Boonham
| Development of real-time RT-PCR assays for the detection of Cucumber vein yellowing virus (CVYV) and Cucurbit yellow stunting disorder virus (CYSDV) in the whitefly vector Bemisia tabaci | 2007 |
|
Professor Giles Budge
Professor Neil Boonham
| Occurrence of two different types of RNA-5-containing beet necrotic yellow vein virus in the UK | 2007 |
|
Professor Rick Mumford
Professor Neil Boonham
| Advances in molecular phytodiagnostics - New solutions for old problems | 2006 |
|
Professor Neil Boonham
| Host range studies for Tomato chlorosis virus, and Cucumber vein yellowing virus transmitted by Bemisia tabaci (Gennadius) | 2006 |
|
Professor Neil Boonham
| Potato virus Y from petunia can cause symptoms of potato tuber necrotic ringspot disease (PTNRD) | 1999 |
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