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Common variation at 1q23.3, 2p23.3, 2q33.3, and 2p21 influences risk of acute myeloid leukemia

Lookup NU author(s): Dean Ranasinghe, Dr Wei-Yu Lin, Dr Sarah FordhamORCiD, Dr Abrar Alharbi, Dr Nicola Sunter, Dr Claire Elstob, Mohammed Nahari, Dr Yaobo Xu, Dr Catherine Park, Dr Thahira Rahman, Dr Gail Jones, Dr Helen Marr, Professor Graham Jackson, Dr Tobias Menne, Professor Matthew CollinORCiD, Professor Olaf Heidenreich, Dr Amir EnshaeiORCiD, Dumni Gunasinghe, Zoe Hawking, Holly Heslop, Bingjing Di, Imogen Brown, Dr Paul Milne, Jean Norden, Professor Anne Dickinson, Dr Clare LendremORCiD, Professor Ann DalyORCiD, Professor Heather CordellORCiD, Dr Rebecca DarlayORCiD, Professor James AllanORCiD

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This work is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).


Abstract

Acute myeloid leukemia (AML) is a complex hematological malignancy with multiple disease sub-groups defined by somatic mutations and heterogeneous outcomes. Although genome-wide association studies (GWAS) have identified a small number of common genetic variants influencing AML risk, the heritable component of this disease outside of familial susceptibility remains largely undefined. Here we perform a meta-analysis of four published GWAS plus two new GWAS, totalling 4710 AML cases and 12938 controls. We identify a new genome-wide significant risk locus for pan-AML at 2p23.3 (rs4665765; P=1.35x10-8; EFR3B, POMC, DNMT3A, DNAJC27) which also significantly associates with patient survival (P=6.09x10-3). Our analysis also identifies three new genome-wide significant risk loci for disease sub-groups, including AML with deletions of chromosome 5 and/or 7 at 1q23.3 (rs12078864; P=7.0x10-10; DUSP23) and cytogenetically complex AML at 2q33.3 (rs12988876; P=3.28x10-8; PARD3B) and 2p21 (rs79918355; P=1.60x10-9; EPCAM). We also investigated loci previously associated with risk of clonal hematopoiesis (CH) or clonal hematopoiesis of indeterminate potential (CHIP) and identified several variants associated with risk of AML. Our results further inform on AML etiology and demonstrate the existence of disease sub-group specific risk loci.


Publication metadata

Author(s): Ranasinghe D, Lin WY, Fordham SE, Alharbi AA, Sunter NJ, Elstob C, Nahari MH, Xu Y, Park C, Hungate E, Quante A, Strauch K, Gieger C, Skol AD, Rahman T, Sucheston-Campbell L, Hahn T, Clay-Gilmour AI, Jones GL, Marr HJ, Jackson GH, Menne T, Collin M, Ivey A, Hills RK, Burnett AK, Russell NH, Fitzgibbon J, Larson RA, Le Beau MM, Stock W, Heidenreich O, Enshaei A, Gunasinghe D, Hawking ZL, Heslop HS, Nandana D, Di B, Plokhuta A, Brown IT, Allsup DJ, Houlston RS, Collins A, Milne P, Norden J, Dickinson AM, Lendrem BC, Daly AK, Palm L, Piechocki K, Jeffries S, Bornhäuser M, Röllig C, Altmann H, Ruhnke L, Kunadt D, Wagenführ L, Cordell HJ, Darlay R, Andersen MK, Fontana MC, Martinelli G, Marconi G, Sanz MÁ, Cervera J, Gomez-Segui I, Cluzeau T, Moreilhon C, Raynaud S, Sill H, Voso MT, Dombret H, Cheok MH, Preudhomme C, Gale RE, Linch DC, Weisinger J, Masszi A, Nowak D, Hofmann WK, Gilkes AF, Porkka K, Milosevic Feenstra JD, Kralovics R, Wang J, Meggendorfer M, Haferlach T, Krizsán S, Bödör C, Parkin BL, Malek SN, Stölzel F, Onel K, Allan JM

Publication type: Article

Publication status: Published

Journal: Blood

Year: 2026

Pages: Epub ahead of print

Online publication date: 02/02/2026

Acceptance date: 19/12/2025

Date deposited: 10/02/2026

ISSN (print): 0006-4971

ISSN (electronic): 1528-0020

Publisher: American Society of Hematology

URL: https://doi.org/10.1182/blood.2025031266

DOI: 10.1182/blood.2025031266

ePrints DOI: 10.57711/6atq-ef26

Data Access Statement: Full summary-level association data from meta-analyses of pan-AML, complex AML, del5/7 AML and cytogenetically normal AML are available via the GWAS catalog (study accession numbers GCST90707271, GCST90707272, GCST90707273, GCST90707274).

PubMed id: 41610418


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Funding

Funder referenceFunder name
Blood Cancer UK (to JMA; #06002 and #13044)
Medical Research Council DiMeN Doctoral Training Programme

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