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Browsing publications by Dr Goksel Misirli.

Newcastle AuthorsTitleYearFull text
Bradley Brown
Jasmine Bird
Dr Angel Goni-Moreno
James Alastair McLaughlin McLaughlin
Dr Goksel Misirli
et al.
Capturing Multicellular System Designs Using Synthetic Biology Open Language (SBOL)2020
James Alastair McLaughlin McLaughlin
Dr Goksel Misirli
Professor Anil Wipat
The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering2020
Dr Goksel Misirli
Professor Anil Wipat
Harmonizing semantic annotations for computational models in biology2019
Dr Goksel Misirli
Dr Angel Goni-Moreno
James Alastair McLaughlin McLaughlin
Professor Christopher Myers
Dr Phillip Lord
et al.
SBOL-OWL: An Ontological Approach for Formal and Semantic Representation of Synthetic Biology Information2019
James Alastair McLaughlin McLaughlin
Professor Christopher Myers
Zach Zundel
Dr Goksel Misirli
Dr Dana Ofiteru
et al.
SynBioHub: A Standards-Enabled Design Repository for Synthetic Biology2018
Professor Christopher Myers
James Alastair McLaughlin McLaughlin
Dr Goksel Misirli
Professor Anil Wipat
A standard-enabled workflow for synthetic biology2017
James Alastair McLaughlin McLaughlin
Dr Goksel Misirli
Zach Zundel
Professor Anil Wipat
A synthetic biology workflow using SBOL2017
Dr Goksel Misirli
Dr Phillip Lord
Tawny-SBOL: Using ontologies to design and constrain genetic circuits2017
Dr Goksel Misirli
Dr Curtis Madsen
Owen Gilfellon
Dr Paolo Zuliani
Professor Anil Wipat
et al.
Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualisation2016
Dr Goksel Misirli
Dr Jennifer Hallinan
Dr Phillip Lord
James Alastair McLaughlin McLaughlin
Professor Anil Wipat
et al.
Data Integration and Mining for Synthetic Biology Design2016
Dr Goksel Misirli
Zach Zundel
Professor Anil Wipat
Professor Christopher Myers
libSBOLj 2.0: A Java Library to Support SBOL 2.02016
Dr Goksel Misirli
Dr Curtis Madsen
Professor Anil Wipat
Sharing Structure and Function in Biological Design with SBOL 2.02016
Dr Curtis Madsen
James Alastair McLaughlin McLaughlin
Dr Goksel Misirli
Dr Keith Flanagan
Dr Jennifer Hallinan
et al.
The SBOL Stack: A Platform for Storing, Publishing, and Sharing Synthetic Biology Designs2016
James Alastair McLaughlin McLaughlin
Dr Goksel Misirli
Dr Curtis Madsen
Professor Anil Wipat
VisBOL: Web-Based Tools for Synthetic Biology Design Visualization2016
Dr Matthew Pocock
Dr Curtis Madsen
Dr Goksel Misirli
Professor Anil Wipat
Proposed Data Model for the Next Version of the Synthetic Biology Open Language2015
Dr Goksel Misirli
Dr Matthew Pocock
The Synthetic Biology Open Language2015
Dr Goksel Misirli
Dr Jennifer Hallinan
Professor Anil Wipat
BacillusRegnet: a transcriptional regulation database and analysis platform for Bacillus species2014
Dr Goksel Misirli
Dr Jennifer Hallinan
Professor Anil Wipat
Composable Modular Models for Synthetic Biology2014
Dr Goksel Misirli
Dr Jennifer Hallinan
Professor Anil Wipat
Composable modular models for synthetic biology2014
Dr Matthew Pocock
Dr Jennifer Hallinan
Dr Goksel Misirli
Professor Anil Wipat
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology2014
Dr Jennifer Hallinan
Owen Gilfellon
Dr Goksel Misirli
Professor Anil Wipat
Tuning Receiver Characteristics in Bacterial Quorum Communication: An Evolutionary Approach Using Standard Virtual Biological Parts2014
Dr Goksel Misirli
Professor Anil Wipat
Joseph Mullen
Dr Katherine James
Dr Matthew Pocock
et al.
BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology2013
Dr Susanne Pohl
John Hulme
Dr Goksel Misirli
Dr David Radford
Dr Wayne Smith
et al.
Proteomic analysis of Bacillus subtilis strains engineered for improved production of heterologous proteins2013
Dr Goksel Misirli
Dr Jennifer Hallinan
Dr Matthew Pocock
Dr Simon Cockell
Jochen Weile
et al.
BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology2011
Dr Goksel Misirli
Dr Jennifer Hallinan
Professor Anil Wipat
Model annotation for synthetic biology: automating model to nucleotide sequence conversion2011
Dr Goksel Misirli
SBML Level 3 Package Proposal: Annotation2011
Dr Curtis Madsen
Dr Goksel Misirli
Professor Anil Wipat
Synthetic Biology Open Language (SBOL) Version 1.0.02011
Dr Jennifer Hallinan
Dr Goksel Misirli
Professor Anil Wipat
Evolutionary computation for the design of a stochastic switch for synthetic genetic circuits2010
Dr Goksel Misirli
Dr Jennifer Hallinan
Professor Anil Wipat
Standard virtual biological parts: a repository of modular modeling components for synthetic biology2010