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Browsing publications by Dr Benjamin Shirt-Ediss.

Newcastle AuthorsTitleYearFull text
Dr Emanuela Torelli
Dr Benjamin Shirt-Ediss
Dr Silvia Navarro
Professor Natalio Krasnogor
Co-transcriptionally folded RNA origami and DNA stack memory as potential interfaces able to operate in vivo2023
Dr Emanuela Torelli
Dr Benjamin Shirt-Ediss
Dr Silvia Navarro
Professor Natalio Krasnogor
Light-up split Broccoli aptamer as a versatile tool for RNA assembly monitoring in cell-free TX-TL system, hybrid RNA/DNA origami tagging and DNA biosensing2023
Dr Benjamin Shirt-Ediss
Jordan Connolly
Dr Emanuela Torelli
Dr Silvia Navarro
Professor Jaume Bacardit
et al.
Reverse engineering DNA origami nanostructure designs from raw scaffold and staple sequence list2023
Dr Benjamin Shirt-Ediss
Jordan Connolly
Dr Emanuela Torelli
Dr Silvia Navarro
Professor Jaume Bacardit
et al.
Multi-Objective Sequence Selection for Scaffolded Origami Nanostructures2022
Dr Emanuela Torelli
Dr Benjamin Shirt-Ediss
Dr Silvia Navarro
Professor Natalio Krasnogor
Towards in vivo RNA origami self-assembly2022
Dr Annunziata Lopiccolo
Dr Benjamin Shirt-Ediss
Dr Emanuela Torelli
Dr Harold Fellermann
Professor Natalio Krasnogor
et al.
A last-in first-out stack data structure implemented in DNA2021
Jordan Connolly
Dr Benjamin Shirt-Ediss
Dr Emanuela Torelli
Leanne Hobbs
Professor Jaume Bacardit
et al.
NAOMEE: Nucleic Acid Origami Minimal Exchange Format.2021
Dr Emanuela Torelli
Dr Benjamin Shirt-Ediss
Professor Natalio Krasnogor
Co-transcriptional folding of a bio-orthogonal fluorescent scaffolded RNA origami2020
Dr Benjamin Shirt-Ediss
Dr Jordan Connolly
Dr Emanuela Torelli
Professor Natalio Krasnogor
REVNANO: An Algorithm to Reverse Engineer Scaffolded DNA/RNA Origami Designs from Sequence Information Only2020
Dr Emanuela Torelli
Dr Jurek Kozyra
Dr Benjamin Shirt-Ediss
Professor Natalio Krasnogor
Towards in vivo origami: bio-orthogonal scaffolded RNA nanoribbons self-assembled via co-transcriptional folding2020
Dr Emanuela Torelli
Dr Jurek Kozyra
Dr Benjamin Shirt-Ediss
Professor Natalio Krasnogor
Towards in vivo origami: co-transcriptional folding of a bio-orthogonal scaffolded RNA nanoribbon2020
Dr Harold Fellermann
Dr Benjamin Shirt-Ediss
Dr Jurek Kozyra
Matt Linsley
Dr Dennis Lendrem
et al.
Design of experiments and the virtual PCR simulator: An online game for pharmaceutical scientists and biotechnologists2019
Dr Benjamin Shirt-Ediss
Professor Natalio Krasnogor
Dr Harold Fellermann
The fittest, the common, and the dullest: Selection dynamics of exact autocatalytic replicators2018
Dr Jurek Kozyra
Dr Harold Fellermann
Dr Benjamin Shirt-Ediss
Dr Annunziata Lopiccolo
Professor Natalio Krasnogor
et al.
Optimizing nucleic acid sequences for a molecular data recorder2017
Alessandro Ceccarelli
Dr Emanuela Torelli
Dr Annunziata Lopiccolo
Dr Harold Fellermann
Dr Benjamin Shirt-Ediss
et al.
Toward in vivo nanostructures: hybrid origami scaffolds on De Bruijn sequence2017