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Browsing publications by Dr Benjamin Shirt-Ediss.

Newcastle AuthorsTitleYearFull text
Dr Emanuela Torelli
Dr Benjamin Shirt-Ediss
Dr Silvia Navarro
Professor Natalio Krasnogor
Co-transcriptionally folded RNA origami and DNA stack memory as potential interfaces able to operate in vivo2023
Dr Emanuela Torelli
Dr Benjamin Shirt-Ediss
Dr Silvia Navarro
Professor Natalio Krasnogor
Light-up split Broccoli aptamer as a versatile tool for RNA assembly monitoring in cell-free TX-TL system, hybrid RNA/DNA origami tagging and DNA biosensing2023
Dr Benjamin Shirt-Ediss
Dr Jordan Connolly
Dr Emanuela Torelli
Dr Silvia Navarro
Professor Jaume Bacardit
et al.
Reverse engineering DNA origami nanostructure designs from raw scaffold and staple sequence list2023
Dr Benjamin Shirt-Ediss
Dr Jordan Connolly
Dr Emanuela Torelli
Dr Silvia Navarro
Professor Jaume Bacardit
et al.
Multi-Objective Sequence Selection for Scaffolded Origami Nanostructures2022
Dr Emanuela Torelli
Dr Benjamin Shirt-Ediss
Dr Silvia Navarro
Professor Natalio Krasnogor
Towards in vivo RNA origami self-assembly2022
Dr Annunziata Lopiccolo
Dr Benjamin Shirt-Ediss
Dr Emanuela Torelli
Dr Harold Fellermann
Professor Natalio Krasnogor
et al.
A last-in first-out stack data structure implemented in DNA2021
Dr Jordan Connolly
Dr Benjamin Shirt-Ediss
Dr Emanuela Torelli
Leanne Hobbs
Professor Jaume Bacardit
et al.
NAOMEE: Nucleic Acid Origami Minimal Exchange Format.2021
Dr Emanuela Torelli
Dr Benjamin Shirt-Ediss
Professor Natalio Krasnogor
Co-transcriptional folding of a bio-orthogonal fluorescent scaffolded RNA origami2020
Dr Benjamin Shirt-Ediss
Dr Jordan Connolly
Dr Emanuela Torelli
Professor Natalio Krasnogor
REVNANO: An Algorithm to Reverse Engineer Scaffolded DNA/RNA Origami Designs from Sequence Information Only2020
Dr Emanuela Torelli
Dr Jurek Kozyra
Dr Benjamin Shirt-Ediss
Professor Natalio Krasnogor
Towards in vivo origami: bio-orthogonal scaffolded RNA nanoribbons self-assembled via co-transcriptional folding2020
Dr Emanuela Torelli
Dr Jurek Kozyra
Dr Benjamin Shirt-Ediss
Professor Natalio Krasnogor
Towards in vivo origami: co-transcriptional folding of a bio-orthogonal scaffolded RNA nanoribbon2020
Dr Harold Fellermann
Dr Benjamin Shirt-Ediss
Dr Jurek Kozyra
Matt Linsley
Dr Dennis Lendrem
et al.
Design of experiments and the virtual PCR simulator: An online game for pharmaceutical scientists and biotechnologists2019
Dr Benjamin Shirt-Ediss
Professor Natalio Krasnogor
Dr Harold Fellermann
The fittest, the common, and the dullest: Selection dynamics of exact autocatalytic replicators2018
Dr Jurek Kozyra
Dr Harold Fellermann
Dr Benjamin Shirt-Ediss
Dr Annunziata Lopiccolo
Professor Natalio Krasnogor
et al.
Optimizing nucleic acid sequences for a molecular data recorder2017
Alessandro Ceccarelli
Dr Emanuela Torelli
Dr Annunziata Lopiccolo
Dr Harold Fellermann
Dr Benjamin Shirt-Ediss
et al.
Toward in vivo nanostructures: hybrid origami scaffolds on De Bruijn sequence2017