Publications by Dr Benjamin Shirt-Ediss - ePrints

Browsing publications by Dr Benjamin Shirt-Ediss.

Newcastle Authors	Title	Year
Dr Emanuela Torelli Dr Benjamin Shirt-Ediss Dr Silvia Navarro Professor Natalio Krasnogor	Co-transcriptionally folded RNA origami and DNA stack memory as potential interfaces able to operate in vivo	2023
Dr Emanuela Torelli Dr Benjamin Shirt-Ediss Dr Silvia Navarro Professor Natalio Krasnogor	Light-up split Broccoli aptamer as a versatile tool for RNA assembly monitoring in cell-free TX-TL system, hybrid RNA/DNA origami tagging and DNA biosensing	2023
Dr Benjamin Shirt-Ediss Dr Jordan Connolly Dr Emanuela Torelli Dr Silvia Navarro Professor Jaume Bacardit et al.	Reverse engineering DNA origami nanostructure designs from raw scaffold and staple sequence list	2023
Dr Benjamin Shirt-Ediss Dr Jordan Connolly Dr Emanuela Torelli Dr Silvia Navarro Professor Jaume Bacardit et al.	Multi-Objective Sequence Selection for Scaffolded Origami Nanostructures	2022
Dr Emanuela Torelli Dr Benjamin Shirt-Ediss Dr Silvia Navarro Professor Natalio Krasnogor	Towards in vivo RNA origami self-assembly	2022
Dr Annunziata Lopiccolo Dr Benjamin Shirt-Ediss Dr Emanuela Torelli Dr Harold Fellermann Professor Natalio Krasnogor et al.	A last-in first-out stack data structure implemented in DNA	2021
Dr Jordan Connolly Dr Benjamin Shirt-Ediss Dr Emanuela Torelli Leanne Hobbs Professor Jaume Bacardit et al.	NAOMEE: Nucleic Acid Origami Minimal Exchange Format.	2021
Dr Emanuela Torelli Dr Benjamin Shirt-Ediss Professor Natalio Krasnogor	Co-transcriptional folding of a bio-orthogonal fluorescent scaffolded RNA origami	2020
Dr Benjamin Shirt-Ediss Dr Jordan Connolly Dr Emanuela Torelli Professor Natalio Krasnogor	REVNANO: An Algorithm to Reverse Engineer Scaffolded DNA/RNA Origami Designs from Sequence Information Only	2020
Dr Emanuela Torelli Dr Jurek Kozyra Dr Benjamin Shirt-Ediss Professor Natalio Krasnogor	Towards in vivo origami: bio-orthogonal scaffolded RNA nanoribbons self-assembled via co-transcriptional folding	2020
Dr Emanuela Torelli Dr Jurek Kozyra Dr Benjamin Shirt-Ediss Professor Natalio Krasnogor	Towards in vivo origami: co-transcriptional folding of a bio-orthogonal scaffolded RNA nanoribbon	2020
Dr Harold Fellermann Dr Benjamin Shirt-Ediss Dr Jurek Kozyra Matt Linsley Dr Dennis Lendrem et al.	Design of experiments and the virtual PCR simulator: An online game for pharmaceutical scientists and biotechnologists	2019
Dr Benjamin Shirt-Ediss Professor Natalio Krasnogor Dr Harold Fellermann	The fittest, the common, and the dullest: Selection dynamics of exact autocatalytic replicators	2018
Dr Jurek Kozyra Dr Harold Fellermann Dr Benjamin Shirt-Ediss Dr Annunziata Lopiccolo Professor Natalio Krasnogor et al.	Optimizing nucleic acid sequences for a molecular data recorder	2017
Alessandro Ceccarelli Dr Emanuela Torelli Dr Annunziata Lopiccolo Dr Harold Fellermann Dr Benjamin Shirt-Ediss et al.	Toward in vivo nanostructures: hybrid origami scaffolds on De Bruijn sequence	2017