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Unravelling genotype-phenotype correlations in Stargardt disease using patient-derived retinal organoids

Lookup NU author(s): Avril Watson, Dr Rachel QueenORCiD, Dr Joseph Collin, Raf Hussain, Dr Jonathan Coxhead, Michael McCorkindaleORCiD, Dr Darin Zerti, Dr Valeria Chichagova, Professor Lyle ArmstrongORCiD, Professor Majlinda LakoORCiD

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This work is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).


Abstract

© The Author(s) 2025. Stargardt disease is an inherited retinopathy affecting approximately 1:8000 individuals. It is characterised by biallelic variants in ABCA4 which encodes a vital protein for the recycling of retinaldehydes in the retina. Despite its prevalence and impact, there are currently no treatments available for this condition. Furthermore, 35% of STGD1 cases remain genetically unsolved. To investigate the cellular and molecular characteristics associated with STGD1, we generated iPSCs from two monoallelic unresolved (PT1 & PT2), late-onset STGD1 cases with the heterozygous complex allele - c.[5461-10 T > C;5603 A > T]. Both patient iPSCs and those from a biallelic affected control (AC) carrying -c.4892 T > C and c.4539+2001G > A, were differentiated to retinal organoids, which developed all key retinal neurons and photoreceptors with outer segments positive for ABCA4 expression. We observed patient-specific disruption to lamination with OPN1MW/LW+ cone photoreceptor retention in the retinal organoid centre during differentiation. Photoreceptor retention was more severe in the AC case affecting both cones and rods, suggesting a genotype/phenotype correlation. scRNA-Seq suggests retention may be due to the induction of stress-related pathways in photoreceptors. Whole genome sequencing successfully identified the missing alleles in both cases; PT1 reported c.-5603A > T in homozygous state and PT2 uncovered a rare hypomorph - c.-4685T > C. Furthermore, retinal organoids were able to recapitulate the retina-specific splicing defect in PT1 as shown by long-read RNA-seq data. Collectively, these results highlight the suitability of retinal organoids in STGD1 modelling. Their ability to display genotype-phenotype correlations enhances their utility as a platform for therapeutic development. (Figure presented.)


Publication metadata

Author(s): Watson A, Queen R, Ferrandez-Peral L, Dorgau B, Collin J, Nelson A, Hussain R, Coxhead J, McCorkindale M, Atkinson R, Zerti D, Chichagova V, Conesa A, Armstrong L, Cremers FPM, Lako M

Publication type: Article

Publication status: Published

Journal: Cell Death and Disease

Year: 2025

Volume: 16

Online publication date: 19/02/2025

Acceptance date: 03/02/2025

Date deposited: 10/03/2025

ISSN (electronic): 2041-4889

Publisher: Springer Nature

URL: https://doi.org/10.1038/s41419-025-07420-7

DOI: 10.1038/s41419-025-07420-7

Data Access Statement: scRNA-Seq data has been deposited to GEO under the following accession number: GSE236097.


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Funding

Funder referenceFunder name
EPSRC (grant number EP/Y031016/1)
European Union's Horizon 2020 research and innovation programme Marie Skłodowska-Curie ITN Network StarT (#813490)

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