Publications by Dr Katherine James - ePrints

Browsing publications by Dr Katherine James.

Newcastle Authors	Title	Year
Christian Atallah Atallah Dr Katherine James Zhen Ou Dr James Skelton Dr David Markham et al.	A method for the systematic selection of enzyme panel candidates by solving the maximum diversity problem	2024
Chile Siachisumo Dr Sara Luzzi Saad Aldalaqan Dr Gerald Hysenaj Caroline Dalgliesh et al.	An anciently diverged family of RNA binding proteins maintain correct splicing of a class of ultra-long exons through cryptic splice site repression	2024
Dr Katherine James	Evaluation of genome skimming to detect and characterise human and livestock helminths	2023
Christian Atallah Dr Katherine James Zhen Ou Dr David Markham Professor Anil Wipat et al.	Automatic Diverse Subset Selection From Enzyme Families by Solving the Maximum Diversity Problem	2022
Dr Katherine James Dr Jose Munoz Munoz	Computational Network Inference for Bacterial Interactomics	2022
Dr Katherine James Professor Anil Wipat Dr Simon Cockell	Expanding Interactome Analyses beyond Model Eukaryotes	2022
Dr Katherine James Aoesha Alsobhe Dr Simon Cockell Professor Anil Wipat Dr Matthew Pocock et al.	Integration of probabilistic functional networks without an external Gold Standard	2022
Dr Katherine James	Complete representation of a tapeworm genome reveals chromosomes capped by centromeres, necessitating a dual role in segregation and protection	2020
Amber Riaz-Bradley Dr Katherine James Dr Yulia Yuzenkova	High intrinsic hydrolytic activity of cyanobacterial RNA polymerase compensates for the absence of transcription proofreading factors	2020
Dr Katherine James	The tapeworm interactome: inferring confidence scored protein-protein interactions from the proteome of Hymenolepis microstoma	2020
Dr Ingrid Ehrmann Dr Katherine James Yilei Liu Dr Sushma Grellscheid Dr Jannetta Steyn et al.	An ancient germ cell-specific RNA-binding protein protects the germline from cryptic splice site poisoning	2019
Jessica Tarn Dr Nadia Howard-Tripp Dr Dennis Lendrem Andrew Skelton Dr Katherine James et al.	Symptom-based stratification of patients with primary Sjögren's syndrome: multi-dimensional characterisation of international observational cohorts and reanalyses of randomised clinical trials	2019
Dr Katherine James	The synarcual of the Little Skate, Leucoraja erinacea: novel development among the vertebrates.	2019
Dr Jennifer Munkley Karen Livermore Dr Ingrid Ehrmann Dr Katherine James Dr Prabhakar Rajan et al.	Androgen-dependent alternative mRNA isoform expression in prostate cancer cells	2018
Dr Katherine James Dr Simon Cockell Dr Colin Gillespie Dr Jennifer Hallinan Dr Francesca Barone et al.	B-cell activity markers are associated with different disease activity domains in primary Sjögren's syndrome	2018
Professor Fai Ng Dr Katherine James Dr Bridget Griffiths Dr David Coady Dr Steven Young-Min et al.	Comparison of ESSDAI and ClinESSDAI in potential optimisation of trial outcomes in primary Sjögren's syndrome: Examination of data from the UK Primary Sjögren's Syndrome Registry	2018
Dr Pamela Gamba Dr Katherine James Professor Nikolay Zenkin	A link between transcription fidelity and pausing in vivo	2017
Sheryl Mitchell Dr Katherine James Professor Fai Ng Dr Bridget Griffiths Vicki Hindmarsh et al.	Corrigendum: Eligibility for clinical trials in primary Sjögren's syndrome: Lessons from the UK Primary Sjögren's Syndrome Registry [Rheumatology, 55, (2016) (544-552)] doi:10.1093/rheumatology/kev373	2017
Dr Katherine James Dr Simon Cockell Professor Nikolay Zenkin	Deep sequencing approaches for the analysis of prokaryotic transcriptional boundaries and dynamics	2017
Dr Katherine James Dr Pamela Gamba Dr Simon Cockell Professor Nikolay Zenkin	Misincorporation by RNA polymerase is a major source of transcription pausing in vivo	2017
Dr David Forrest Dr Katherine James Dr Yulia Yuzenkova Professor Nikolay Zenkin	Single-peptide DNA-dependent RNA polymerase homologous to multi-subunit RNA polymerase	2017
Sheryl Mitchell Dr Katherine James Professor Fai Ng Dr Bridget Griffiths Vicki Hindmarsh et al.	Eligibility for clinical trials in primary Sjogren's syndrome: lessons from the UK Primary Sjogren's Syndrome Registry	2016
Dr Jennifer Munkley Karen Livermore Dr Katherine James Dr Brian Wilson Professor Craig Robson et al.	Glycosylation is an Androgen-Regulated Process Essential for Prostate Cancer Cell Viability	2016
Dr Andrew Best Dr Katherine James Gerald Hysenaj Professor Alison Tyson-Capper Professor David Elliott et al.	Transformer2 proteins protect breast cancer cells from accumulating replication stress by ensuring productive splicing of checkpoint kinase 1	2016
Dr Katherine James Shereen Al-Ali Jessica Tarn Dr Simon Cockell Dr Colin Gillespie et al.	A Transcriptional Signature of Fatigue Derived from Patients with Primary Sjögren’s Syndrome	2015
Professor Fai Ng Dr Katherine James Dr Bridget Griffiths Dr James Andrews Dr Vadivelu Saravanan et al.	Eligibility for Clinical Trials in Primary Sjogren's Syndrome: Lessons from the UK Primary Sjogren's Registry	2015
Shereen Al-Ali Dr Simon Cockell Jessica Tarn Dr Katherine James Sarah Bowman et al.	Identification of Whole Blood Gene Expression Signature in Primary Sjogren's Syndrome Associated Lymphoma	2015
Shereen Al-Ali Dr Simon Cockell Andrew Skelton Dr Katherine James Jessica Tarn et al.	Identification of Whole Blood Gene Expression Signature in Primary Sjogren's Syndrome Associated Lymphoma	2014
Dr Katherine James Jessica Tarn Shereen Al-Ali Dr Jennifer Hallinan Professor David Young et al.	Integration of Gene Expression Data with Interaction and Annotation Data Reveals Patterns of Connection Between Primary Sjögren’s Syndrome Associated Genes and Immune Processes	2014
Dr Katherine James Dr Dennis Lendrem Sheryl Mitchell Vicki Hindmarsh Dr David Coady et al.	The UK Primary Sjögren’s Syndrome Registry (UKPSSR): A Valuable Resource for Future Sjögren’s Syndrom Research	2014
Jessica Tarn Dr Simon Cockell Dr Colin Gillespie Shereen Al-Ali Dr Katherine James et al.	Whole Blood microRNA Signature for Primary Sjogren's Syndrome-Related Lymphoma	2014
Dr Goksel Misirli Professor Anil Wipat Joseph Mullen Dr Katherine James Dr Matthew Pocock et al.	BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology	2013
Jochen Weile Dr Katherine James Dr Jennifer Hallinan Dr Simon Cockell Dr Phillip Lord et al.	Bayesian integration of networks without gold standards	2012
Dr Katherine James Professor Anil Wipat Dr Jennifer Hallinan	Is newer better?-evaluating the effects of data curation on integrated analyses in Saccharomyces cerevisiae	2012
Dr Katherine James Professor Anil Wipat Dr Jennifer Hallinan	Multiple Gold Standards Address Bias in Functional Network Integration	2011
Dr Jennifer Hallinan Dr Katherine James Professor Anil Wipat	Network Approaches to the Functional Analysis of Microbial Proteins	2011
Dr Katherine James Professor Anil Wipat Dr Jennifer Hallinan	Integration of full-coverage probabilistic functional networks with relevance to specific biological processes	2009
Dr Katherine James Professor Anil Wipat Dr Jennifer Hallinan	Integration of full-coverage probabilistic functional networks with relevance to specific biological processes	2009
Dr Allyson Lister Dr Katherine James	Interfacing systems biology and synthetic biology	2009
Dr Stephen Addinall Dawn Downey Dr Min Yu Dr Mikhajlo Zubko James Dewar et al.	A Genome-wide Suppressor and Enhancer Analysis of cdc13-1 Reveals Varied Cellular Processes Influencing Telomere Capping in Saccharomyces cerevisiae	2008