Publications by Emeritus Professor T. Martin Embley FMedSci FRS - ePrints

Browsing publications by Emeritus Professor T. Martin Embley FMedSci FRS.

Newcastle Authors	Title	Year
Dr Kacper Sendra Andrew Watson Ekaterina Kozhevnikova Emeritus Professor T. Martin Embley FMedSci FRS Professor Robert Hirt et al.	Inhibition of mitosomal alternative oxidase causes lifecycle arrest of early-stage Trachipleistophora hominis meronts during intracellular infection of mammalian cells	2022
Emeritus Professor T. Martin Embley FMedSci FRS	It Took Me a While to Figure out What Science I Really Wanted to Do	2022
Emeritus Professor T. Martin Embley FMedSci FRS	Inferring the Deep Past from Molecular Data	2021
Emeritus Professor T. Martin Embley FMedSci FRS	Author Correction: Phylogenomics provides robust support for a two-domains tree of life (Nature Ecology & Evolution, (2020), 4, 1, (138-147), 10.1038/s41559-019-1040-x)	2020
Will Lewis Dr Kacper Sendra Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	Convergent evolution of hydrogenosomes from mitochondria by gene transfer and loss	2020
Dr Sarah Heaps Dr Tom Nye Professor Richard Boys Dr Svetlana Cherlin Emeritus Professor T. Martin Embley FMedSci FRS et al.	Generalizing rate heterogeneity across sites in statistical phylogenetics	2020
Dr Naomi Hannaford Dr Sarah Heaps Dr Tom Nye Emeritus Professor T. Martin Embley FMedSci FRS	Incorporating compositional heterogeneity into Lie Markov models for phylogenetic inference	2020
Emeritus Professor T. Martin Embley FMedSci FRS	Phylogenomics provides robust support for a two-domains tree of life	2020
Dr Peter Major Dr Kacper Sendra Dr Paul Dean Dr Tom Williams Andrew Watson et al.	A new family of cell surface located purine transporters in Microsporidia and related fungal endoparasites	2019
Will Lewis Emeritus Professor T. Martin Embley FMedSci FRS	Genomes of two archaeal endosymbionts show convergent adaptations to an intracellular lifestyle	2018
Will Lewis Dr Kacper Sendra Emeritus Professor T. Martin Embley FMedSci FRS	Morphology and Phylogeny of a New Species of Anaerobic Ciliate, Trimyema finlayi n. sp., with Endosymbiotic Methanogens	2018
Dr Noel Edwards Dr Catriona Anderson Nichola Conlon Andrew Watson Dr Tim Cheek et al.	Resculpting the binding pocket of APC superfamily LeuT-fold amino acid transporters	2018
Dr Svetlana Cherlin Dr Sarah Heaps Dr Tom Nye Professor Richard Boys Emeritus Professor T. Martin Embley FMedSci FRS et al.	The effect of nonreversibility on inferring rooted phylogenies	2018
Dr Paul Dean Dr Kacper Sendra Dr Tom Williams Andrew Watson Dr Peter Major et al.	Transporter gene acquisition and innovation in the evolution of Microsporidia intracellular parasites	2018
Dr Alina Goldberg Cavalleri Dr Paul Dean Dr Tom Williams Dr Sirintra Nakjang Dr Shaojun Long et al.	Evolutionary conservation and in vitro reconstitution of microsporidian iron–sulfur cluster biosynthesis	2017
Dr Tom Williams Dr Sarah Heaps Emeritus Professor T. Martin Embley FMedSci FRS	Integrative modelling of gene and genome evolution roots the archaeal tree of life	2017
Dr Peter Major Emeritus Professor T. Martin Embley FMedSci FRS	Phylogenetic diversity of NTT nucleotide transport proteins in free-living and parasitic bacteria and Eukaryotes	2017
Dr Tom Williams Dr Sirintra Nakjang Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	A Recent Whole-Genome Duplication Divides Populations of a Globally Distributed Microsporidian	2016
Emeritus Professor T. Martin Embley FMedSci FRS	Differential remodelling of peroxisome function underpins the environmental and metabolic adaptability of diplonemids and kinetoplastids	2016
Dr Paul Dean Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	Microsporidia: why make nucleotides if you can steal them?	2016
Emeritus Professor T. Martin Embley FMedSci FRS	Only two domains, not three: Changing views on the tree of life	2016
Dr Tom Williams Emeritus Professor T. Martin Embley FMedSci FRS	Changing ideas about eukaryotic origins	2015
Dr Tom Williams Emeritus Professor T. Martin Embley FMedSci FRS	Coupling of diversification and pH adaptation during the evolution of terrestrial Thaumarchaeota	2015
Professor Robert Hirt Dr Cecilia Alsmark Emeritus Professor T. Martin Embley FMedSci FRS	Lateral gene transfers and the origins of the eukaryote proteome: a view from microbial parasites	2015
Dr Tom Williams Dr Sarah Heaps Dr Svetlana Cherlin Dr Tom Nye Professor Richard Boys et al.	New substitution models for rooting phylogenetic trees	2015
Emeritus Professor T. Martin Embley FMedSci FRS Dr Tom Williams	Plastid establishment did not require a chlamydial partner	2015
Emeritus Professor T. Martin Embley FMedSci FRS Dr Tom Williams	Steps on the road to eukaryotes	2015
Andrew Watson Dr Tom Williams Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	Transcriptomic profiling of host-parasite interactions in the microsporidian Trachipleistophora hominis	2015
Dr Peter Foster Emeritus Professor T. Martin Embley FMedSci FRS	Analyses of Charophyte Chloroplast Genomes Help Characterize the Ancestral Chloroplast Genome of Land Plants	2014
Dr Tom Williams Emeritus Professor T. Martin Embley FMedSci FRS	Archaeal "Dark Matter" and the Origin of Eukaryotes	2014
Dr Sarah Heaps Dr Tom Nye Professor Richard Boys Dr Tom Williams Emeritus Professor T. Martin Embley FMedSci FRS et al.	Bayesian modelling of compositional heterogeneity in molecular phylogenetics	2014
Dr Peter Foster Emeritus Professor T. Martin Embley FMedSci FRS	Compositional Biases among Synonymous Substitutions Cause Conflict between Gene and Protein Trees for Plastid Origins	2014
Emeritus Professor T. Martin Embley FMedSci FRS	Conflicting Phylogenies for Early Land Plants are Caused by Composition Biases among Synonymous Substitutions	2014
Dr Eva Heinz Dr Paul Dean Dr Alina Goldberg Cavalleri Dr Sirintra Nakjang Dr Alison Gregory et al.	Plasma Membrane-Located Purine Nucleotide Transport Proteins are Key Components for Host Exploitation by Microsporidian Intracellular Parasites	2014
Dr Paul Dean Dr Peter Major Dr Sirintra Nakjang Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS et al.	Transport proteins of parasitic protists and their role in nutrient salvage	2014
Dr Tom Williams Dr Peter Foster Emeritus Professor T. Martin Embley FMedSci FRS	An archaeal origin of eukaryotes supports only two primary domains of life	2013
Dr Cecilia Alsmark Dr Sirintra Nakjang Emeritus Professor T. Martin Embley FMedSci FRS Professor Robert Hirt	Patterns of prokaryotic lateral gene transfers affecting parasitic microbial eukaryotes	2013
Dr Sirintra Nakjang Dr Tom Williams Dr Eva Heinz Andrew Watson Dr Peter Foster et al.	Reduction and Expansion in Microsporidian Genome Evolution: New Insights from Comparative Genomics	2013
Dr Tom Williams Dr Tom Nye Emeritus Professor T. Martin Embley FMedSci FRS	A congruent phylogenomic signal places eukaryotes within the Archaea	2012
Dr Eva Heinz Dr Tom Williams Dr Sirintra Nakjang Dr Christophe Noel Dr Daniel Swan et al.	The Genome of the Obligate Intracellular ParasiteTrachipleistophora hominis: New Insights into Microsporidian Genome Dynamics and Reductive Evolution	2012
Dr Naiara Rodriguez-Ezpeleta Emeritus Professor T. Martin Embley FMedSci FRS	The SAR11 Group of Alpha-Proteobacteria Is Not Related to the Origin of Mitochondria	2012
Dr Tom Williams Emeritus Professor T. Martin Embley FMedSci FRS Dr Eva Heinz	Informational Gene Phylogenies Do Not Support a Fourth Domain of Life for Nucleocytoplasmic Large DNA Viruses	2011
Emeritus Professor T. Martin Embley FMedSci FRS	Planctomycetes and eukaryotes: A case of analogy not homology	2011
Dr Karin Hjort Dr Alina Goldberg Cavalleri Anastasios Tsaousis Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS et al.	Diversity and reductive evolution of mitochondria among microbial eukaryotes	2010
Dr Cecilia Alsmark Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	Horizontal gene transfer in eukaryotic parasites: a case study of Entamoeba histolytica and Trichomonas vaginalis	2009
Emeritus Professor T. Martin Embley FMedSci FRS	The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods	2009
Anastasios Tsaousis Dr Alina Goldberg Cavalleri Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	A novel route for ATP acquisition by the remnant mitochondria of Encephalitozoon cuniculi	2008
Dr Alina Goldberg Cavalleri Anastasios Tsaousis Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	Localization and functionality of microsporidian iron-sulphur cluster assembly proteins	2008
Dr Simon Harris Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	Reductive Evolution of the Mitochondrial Processing Peptidases of the Unicellular Parasites Trichomonas vaginalis and Giardia intestinalis	2008
Christopher Cox Professor Robert Hirt Dr Simon Harris Emeritus Professor T. Martin Embley FMedSci FRS	The archaebacterial origin of eukaryotes	2008
Emeritus Professor T. Martin Embley FMedSci FRS	Frataxin, a conserved mitochondrial protein, in the hydrogenosome of Trichomonas vaginalis	2007
Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	Golgi-associated genes in the oxymonad Monocercomonoides sp suggest the presence of a cryptic organelle.	2007
Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	Of clades and clans: terms for phylogenetic relationships in unrooted trees	2007
Dr Christophe Noel Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	Structure and Content of the Entamoeba histolytica Genome	2007
Emeritus Professor T. Martin Embley FMedSci FRS	Eukaryotic evolution, changes and challenges	2006
Dr Joel Dacks Emeritus Professor T. Martin Embley FMedSci FRS	Hydrogenosomal succinyl-CoA synthetase from the rumen-dwelling fungus Neocallimastix patriciarum; an energy-producing enzyme of mitochondrial origin	2006
Emeritus Professor T. Martin Embley FMedSci FRS	Introduction: How and when did microbes change the world?	2006
Emeritus Professor T. Martin Embley FMedSci FRS	Introduction: how and when did microbes change the world?	2006
Emeritus Professor T. Martin Embley FMedSci FRS	Multiple secondary origins of the anaerobic lifestyle in eukaryotes	2006
Emeritus Professor T. Martin Embley FMedSci FRS	Multiple secondary origins of the anaerobic lifestyle in eukaryotes	2006
Dr Joel Dacks Emeritus Professor T. Martin Embley FMedSci FRS	Ultrastructural description of Breviata anathema, N. gen., N. Sp., the organism previously studied as "Mastigamoeba invertens"	2006
Emeritus Professor T. Martin Embley FMedSci FRS	[abstract] Evolution of mitochondria, hydrogeneosomes and their relatives	2005
Emeritus Professor T. Martin Embley FMedSci FRS	A Novel ADP/ATP Transporter in the Mitosome of the Microaerophilic Human parasite Entamoeba histolytica	2005
Emeritus Professor T. Martin Embley FMedSci FRS	A novel ADP/ATP transporter in the mitosome of the microaerophilic human parasite Entamoeba histolytica	2005
Dr Cecilia Alsmark Emeritus Professor T. Martin Embley FMedSci FRS	Comparative genomics of trypanosomatid parasitic protozoa	2005
Emeritus Professor T. Martin Embley FMedSci FRS	Inference of the phylogenetic position of oxymonads based on nine genes: Support for metamonada and Excavata	2005
Emeritus Professor T. Martin Embley FMedSci FRS	Links between ammonia oxidizer species composition, functional diversity and nitrification kinetics in grassland soils	2005
Emeritus Professor T. Martin Embley FMedSci FRS	Primary succession of soil Crenarchaeota across a receding glacier foreland	2005
Dr Cecilia Alsmark Emeritus Professor T. Martin Embley FMedSci FRS	The genome of the African trypanosome Trypanosoma brucei	2005
Dr Cecilia Alsmark Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	The genome of the protist parasite Entamoeba histolytica	2005
Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	Trichomonas hydrogenosomes contain the NADH dehydrogenase module of mitochondrial complex I	2004
Emeritus Professor T. Martin Embley FMedSci FRS	Early evolution comes full circle	2004
Emeritus Professor T. Martin Embley FMedSci FRS	Evolutionary biology - Early evolution comes full circle	2004
Emeritus Professor T. Martin Embley FMedSci FRS	Isolation of haloarchaea that grow at low salinities	2004
Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS Dr Scott Muller	The amitochondriate eukaryote Trichomonas vaginalis contains a divergent thioredoxin-linked peroxiredoxin antioxidant system	2004
Emeritus Professor T. Martin Embley FMedSci FRS	Analysis of the sulfate-reducing bacterial and methanogenic archaeal populations in contrasting Antarctic sediments	2003
Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	Biochemical and genetic evidence for a family of heterotrimeric G-proteins in Trichomonas vaginalis	2003
Emeritus Professor T. Martin Embley FMedSci FRS	Fungal hydrogenosomes contain mitochondrial heat-shock proteins	2003
Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	Horizontal gene transfer and the evolution of parasitic protozoa	2003
Emeritus Professor T. Martin Embley FMedSci FRS	Mitochondria and hydrogenosomes are two forms of the same fundamental organelle	2003
Emeritus Professor T. Martin Embley FMedSci FRS	Phylogenetic analyses of diplomonad genes reveal frequent lateral gene transfers affecting eukaryotes	2003
Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	A mitochondrial remnant in the microsporidian Trachipleistophora hominis	2002
Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	A novel potential surface protein in Trichomonas vaginalis contains a leucine-rich repeat shared by micro-organisms from all three domains of life	2002
Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	A novel potential surface protein in Trichomonas vaginalis contains a leucine-rich repeat shared by micro-organisms from all three domains of life	2002
Emeritus Professor T. Martin Embley FMedSci FRS	An [Fe] hydrogenase from the anaerobic hydrogenosome-containing fungus Neocallimastix frontalis L2	2002
Emeritus Professor T. Martin Embley FMedSci FRS	Anaerobic eukaryotes and their archaebacterial endosymbionts	2002
Emeritus Professor T. Martin Embley FMedSci FRS	Conserved properties of hydrogenosomal and mitochondrial ADP/ATP carriers: a common origin for both organelles	2002
Emeritus Professor T. Martin Embley FMedSci FRS	Cultivation-based and molecular approaches to characterisation of terrestrial and aquatic nitrifiers	2002
Emeritus Professor T. Martin Embley FMedSci FRS	Fructose-1,6-bisphosphate aldolases in amitochondriate protists constitute a single protein subfamily with eubacterial relationships	2002
Emeritus Professor T. Martin Embley FMedSci FRS	Grassland Management Regimens Reduce Small-Scale Heterogeneity and Species Diversity of beta-Proteobacterial Ammonia Oxidizer Populations	2002
Emeritus Professor T. Martin Embley FMedSci FRS	Iron hydrogenases, ancient enzymes in modern eukaryotes	2002
Emeritus Professor T. Martin Embley FMedSci FRS	The distribution and activity of sulphate reducing bacteria in estuarine and coastal marine sediments	2002
Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	The diversity and evolution of thioredoxin reductase: new perspectives	2002
Professor Robert Hirt Dr Katalin Kovacs Emeritus Professor T. Martin Embley FMedSci FRS	The ribulose-1,5-bisphosphate carboxylase/oxygenase gene cluster of Methylococcus capsulatus (Bath)	2002
Emeritus Professor T. Martin Embley FMedSci FRS	Chaperonin 60 phylogeny provides further evidence of secondary loss of mitochondria among putative early-branching eukaryotes	2001
Emeritus Professor T. Martin Embley FMedSci FRS	Species Diversity of Uncultured and Cultured Populations of Soil and Marine Ammonia Oxidizing Bacteria	2001
Emeritus Professor T. Martin Embley FMedSci FRS	Unique phylogenetic relationships of glucokinase and glucosephosphate isomerase of the amitochondriate eukaryotes Giardia intestinalis, Spironucleus barkhanus and Trichomonas vaginalis	2001
Emeritus Professor T. Martin Embley FMedSci FRS	Use of 16S rRNA-targeted oligonucleotide probes to investigate the distribution of sulphate-reducing bacteria in estuarine sediments	2001
Emeritus Professor T. Martin Embley FMedSci FRS	Iron hydrogenases and the evolution of anaerobic eukaryotes	2000
Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	A single eubacterial origin of eukaryotic pyruvate: ferredoxin oxidoreductase genes: implications for the evolution of anaerobic eukaryotes	1999
Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	Microsporidia are related to Fungi: evidence from the largest subunit of RNA polymerase II and other proteins	1999
Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	Microsporidia are related to Fungi: Evidence from the largest subunit of RNA polymerase II and other proteins	1999
Emeritus Professor T. Martin Embley FMedSci FRS Professor Robert Hirt	Early branching eukaryotes?	1998
Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	Molecular and cellular evolution of ciliates: a phylogenetic perspective	1998
Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	Molecular phylogeny of Trichomonads and Naegleria: implication for the relative timing of the mitochondrion endosymbiosis	1998
Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	A mitochondrial Hsp70 orthologue in Vairimorpha necatrix: molecular evidence that microsporidia once contained mitochondria	1997
Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	A mitochondrial-like targeting signal on the hydrogenosomal malic enzyme from the anaerobic fungus Neocallimastix frontalis: support for the hypothesis that hydrogenosomes are modified mitochondria	1997
Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	Molecular data suggest an early acquisition of the mitochondrion endosymbiont	1996
Emeritus Professor T. Martin Embley FMedSci FRS Professor Robert Hirt	Multiple origins of anaerobic ciliates with hydrogenosomes within the radiation of aerobic ciliates	1995
Professor Robert Hirt Emeritus Professor T. Martin Embley FMedSci FRS	Phylogenetic relationships among karyorelictids and heterotrichs inferred from small subunit rRNA sequences: resolution at the base of the ciliate tree	1995
Emeritus Professor T. Martin Embley FMedSci FRS Professor Robert Hirt	Biodiversity at the molecular level: the domains, kingdoms and phyla of life	1994
Emeritus Professor T. Martin Embley FMedSci FRS Professor Robert Hirt	Some rumen ciliates have endosymbiotic methanogens	1994
Professor Ian Head Emeritus Professor T. Martin Embley FMedSci FRS	The Phylogeny of autotrophic ammonia-oxidising bacteria as determined by analysis of 16S ribosomal RNA gene sequences.	1993