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Browsing publications by Professor T. Martin Embley FMedSci FRS.

Newcastle AuthorsTitleYearFull text
Professor T. Martin Embley FMedSci FRS
Inferring the Deep Past from Molecular Data2021
Professor T. Martin Embley FMedSci FRS
Author Correction: Phylogenomics provides robust support for a two-domains tree of life (Nature Ecology & Evolution, (2020), 4, 1, (138-147), 10.1038/s41559-019-1040-x)2020
Will Lewis
Kacper Sendra
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
Convergent evolution of hydrogenosomes from mitochondria by gene transfer and loss2020
Dr Sarah Heaps
Dr Tom Nye
Professor Richard Boys
Dr Svetlana Cherlin
Professor T. Martin Embley FMedSci FRS
et al.
Generalizing rate heterogeneity across sites in statistical phylogenetics2020
Dr Naomi Hannaford
Dr Sarah Heaps
Dr Tom Nye
Professor T. Martin Embley FMedSci FRS
Incorporating compositional heterogeneity into Lie Markov models for phylogenetic inference2020
Professor T. Martin Embley FMedSci FRS
Phylogenomics provides robust support for a two-domains tree of life2020
Dr Peter Major
Kacper Sendra
Dr Paul Dean
Dr Tom Williams
Andrew Watson
et al.
A new family of cell surface located purine transporters in Microsporidia and related fungal endoparasites2019
Will Lewis
Professor T. Martin Embley FMedSci FRS
Genomes of two archaeal endosymbionts show convergent adaptations to an intracellular lifestyle2018
Will Lewis
Kacper Sendra
Professor T. Martin Embley FMedSci FRS
Morphology and Phylogeny of a New Species of Anaerobic Ciliate, Trimyema finlayi n. sp., with Endosymbiotic Methanogens2018
Dr Noel Edwards
Dr Catriona Anderson
Nichola Conlon
Andrew Watson
Dr Tim Cheek
et al.
Resculpting the binding pocket of APC superfamily LeuT-fold amino acid transporters2018
Dr Svetlana Cherlin
Dr Sarah Heaps
Dr Tom Nye
Professor Richard Boys
Professor T. Martin Embley FMedSci FRS
et al.
The effect of nonreversibility on inferring rooted phylogenies2018
Dr Paul Dean
Kacper Sendra
Dr Tom Williams
Andrew Watson
Dr Peter Major
et al.
Transporter gene acquisition and innovation in the evolution of Microsporidia intracellular parasites2018
Dr Alina Goldberg Cavalleri
Dr Paul Dean
Dr Tom Williams
Dr Sirintra Nakjang
Dr Shaojun Long
et al.
Evolutionary conservation and in vitro reconstitution of microsporidian iron–sulfur cluster biosynthesis2017
Dr Tom Williams
Dr Sarah Heaps
Professor T. Martin Embley FMedSci FRS
Integrative modelling of gene and genome evolution roots the archaeal tree of life2017
Dr Peter Major
Professor T. Martin Embley FMedSci FRS
Phylogenetic diversity of NTT nucleotide transport proteins in free-living and parasitic bacteria and Eukaryotes2017
Dr Tom Williams
Dr Sirintra Nakjang
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
A Recent Whole-Genome Duplication Divides Populations of a Globally Distributed Microsporidian2016
Professor T. Martin Embley FMedSci FRS
Differential remodelling of peroxisome function underpins the environmental and metabolic adaptability of diplonemids and kinetoplastids2016
Dr Paul Dean
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
Microsporidia: why make nucleotides if you can steal them?2016
Professor T. Martin Embley FMedSci FRS
Only two domains, not three: Changing views on the tree of life2016
Dr Tom Williams
Professor T. Martin Embley FMedSci FRS
Changing ideas about eukaryotic origins2015
Dr Tom Williams
Professor T. Martin Embley FMedSci FRS
Coupling of diversification and pH adaptation during the evolution of terrestrial Thaumarchaeota2015
Professor Robert Hirt
Dr Cecilia Alsmark
Professor T. Martin Embley FMedSci FRS
Lateral gene transfers and the origins of the eukaryote proteome: a view from microbial parasites2015
Dr Tom Williams
Dr Sarah Heaps
Dr Svetlana Cherlin
Dr Tom Nye
Professor Richard Boys
et al.
New substitution models for rooting phylogenetic trees2015
Professor T. Martin Embley FMedSci FRS
Dr Tom Williams
Plastid establishment did not require a chlamydial partner2015
Professor T. Martin Embley FMedSci FRS
Dr Tom Williams
Steps on the road to eukaryotes2015
Andrew Watson
Dr Tom Williams
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
Transcriptomic profiling of host-parasite interactions in the microsporidian Trachipleistophora hominis2015
Dr Peter Foster
Professor T. Martin Embley FMedSci FRS
Analyses of Charophyte Chloroplast Genomes Help Characterize the Ancestral Chloroplast Genome of Land Plants2014
Dr Tom Williams
Professor T. Martin Embley FMedSci FRS
Archaeal "Dark Matter" and the Origin of Eukaryotes2014
Dr Sarah Heaps
Dr Tom Nye
Professor Richard Boys
Dr Tom Williams
Professor T. Martin Embley FMedSci FRS
et al.
Bayesian modelling of compositional heterogeneity in molecular phylogenetics2014
Dr Peter Foster
Professor T. Martin Embley FMedSci FRS
Compositional Biases among Synonymous Substitutions Cause Conflict between Gene and Protein Trees for Plastid Origins2014
Professor T. Martin Embley FMedSci FRS
Conflicting Phylogenies for Early Land Plants are Caused by Composition Biases among Synonymous Substitutions2014
Dr Eva Heinz
Dr Paul Dean
Dr Alina Goldberg Cavalleri
Dr Sirintra Nakjang
Dr Alison Gregory
et al.
Plasma Membrane-Located Purine Nucleotide Transport Proteins are Key Components for Host Exploitation by Microsporidian Intracellular Parasites2014
Dr Paul Dean
Dr Peter Major
Dr Sirintra Nakjang
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
et al.
Transport proteins of parasitic protists and their role in nutrient salvage2014
Dr Tom Williams
Dr Peter Foster
Professor T. Martin Embley FMedSci FRS
An archaeal origin of eukaryotes supports only two primary domains of life2013
Dr Cecilia Alsmark
Dr Sirintra Nakjang
Professor T. Martin Embley FMedSci FRS
Professor Robert Hirt
Patterns of prokaryotic lateral gene transfers affecting parasitic microbial eukaryotes2013
Dr Sirintra Nakjang
Dr Tom Williams
Dr Eva Heinz
Andrew Watson
Dr Peter Foster
et al.
Reduction and Expansion in Microsporidian Genome Evolution: New Insights from Comparative Genomics2013
Dr Tom Williams
Dr Tom Nye
Professor T. Martin Embley FMedSci FRS
A congruent phylogenomic signal places eukaryotes within the Archaea2012
Dr Eva Heinz
Dr Tom Williams
Dr Sirintra Nakjang
Dr Christophe Noel
Dr Daniel Swan
et al.
The Genome of the Obligate Intracellular ParasiteTrachipleistophora hominis: New Insights into Microsporidian Genome Dynamics and Reductive Evolution2012
Dr Naiara Rodriguez-Ezpeleta
Professor T. Martin Embley FMedSci FRS
The SAR11 Group of Alpha-Proteobacteria Is Not Related to the Origin of Mitochondria2012
Dr Tom Williams
Professor T. Martin Embley FMedSci FRS
Dr Eva Heinz
Informational Gene Phylogenies Do Not Support a Fourth Domain of Life for Nucleocytoplasmic Large DNA Viruses2011
Professor T. Martin Embley FMedSci FRS
Planctomycetes and eukaryotes: A case of analogy not homology2011
Dr Karin Hjort
Dr Alina Goldberg Cavalleri
Anastasios Tsaousis
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
et al.
Diversity and reductive evolution of mitochondria among microbial eukaryotes2010
Dr Cecilia Alsmark
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
Horizontal gene transfer in eukaryotic parasites: a case study of Entamoeba histolytica and Trichomonas vaginalis2009
Professor T. Martin Embley FMedSci FRS
The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods2009
Anastasios Tsaousis
Dr Alina Goldberg Cavalleri
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
A novel route for ATP acquisition by the remnant mitochondria of Encephalitozoon cuniculi2008
Dr Alina Goldberg Cavalleri
Anastasios Tsaousis
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
Localization and functionality of microsporidian iron-sulphur cluster assembly proteins2008
Dr Simon Harris
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
Reductive Evolution of the Mitochondrial Processing Peptidases of the Unicellular Parasites Trichomonas vaginalis and Giardia intestinalis2008
Christopher Cox
Professor Robert Hirt
Dr Simon Harris
Professor T. Martin Embley FMedSci FRS
The archaebacterial origin of eukaryotes2008
Professor T. Martin Embley FMedSci FRS
Frataxin, a conserved mitochondrial protein, in the hydrogenosome of Trichomonas vaginalis2007
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
Golgi-associated genes in the oxymonad Monocercomonoides sp suggest the presence of a cryptic organelle.2007
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
Of clades and clans: terms for phylogenetic relationships in unrooted trees2007
Dr Christophe Noel
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
Structure and Content of the Entamoeba histolytica Genome2007
Professor T. Martin Embley FMedSci FRS
Eukaryotic evolution, changes and challenges2006
Dr Joel Dacks
Professor T. Martin Embley FMedSci FRS
Hydrogenosomal succinyl-CoA synthetase from the rumen-dwelling fungus Neocallimastix patriciarum; an energy-producing enzyme of mitochondrial origin2006
Professor T. Martin Embley FMedSci FRS
Introduction: How and when did microbes change the world?2006
Professor T. Martin Embley FMedSci FRS
Introduction: how and when did microbes change the world?2006
Professor T. Martin Embley FMedSci FRS
Multiple secondary origins of the anaerobic lifestyle in eukaryotes2006
Professor T. Martin Embley FMedSci FRS
Multiple secondary origins of the anaerobic lifestyle in eukaryotes2006
Dr Joel Dacks
Professor T. Martin Embley FMedSci FRS
Ultrastructural description of Breviata anathema, N. gen., N. Sp., the organism previously studied as "Mastigamoeba invertens"2006
Professor T. Martin Embley FMedSci FRS
[abstract] Evolution of mitochondria, hydrogeneosomes and their relatives2005
Professor T. Martin Embley FMedSci FRS
A Novel ADP/ATP Transporter in the Mitosome of the Microaerophilic Human parasite Entamoeba histolytica2005
Professor T. Martin Embley FMedSci FRS
A novel ADP/ATP transporter in the mitosome of the microaerophilic human parasite Entamoeba histolytica2005
Dr Cecilia Alsmark
Professor T. Martin Embley FMedSci FRS
Comparative genomics of trypanosomatid parasitic protozoa2005
Professor T. Martin Embley FMedSci FRS
Inference of the phylogenetic position of oxymonads based on nine genes: Support for metamonada and Excavata2005
Professor T. Martin Embley FMedSci FRS
Links between ammonia oxidizer species composition, functional diversity and nitrification kinetics in grassland soils2005
Professor T. Martin Embley FMedSci FRS
Primary succession of soil Crenarchaeota across a receding glacier foreland2005
Dr Cecilia Alsmark
Professor T. Martin Embley FMedSci FRS
The genome of the African trypanosome Trypanosoma brucei2005
Dr Cecilia Alsmark
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
The genome of the protist parasite Entamoeba histolytica2005
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
Trichomonas hydrogenosomes contain the NADH dehydrogenase module of mitochondrial complex I2004
Professor T. Martin Embley FMedSci FRS
Early evolution comes full circle2004
Professor T. Martin Embley FMedSci FRS
Evolutionary biology - Early evolution comes full circle2004
Professor T. Martin Embley FMedSci FRS
Isolation of haloarchaea that grow at low salinities2004
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
Dr Scott Muller
The amitochondriate eukaryote Trichomonas vaginalis contains a divergent thioredoxin-linked peroxiredoxin antioxidant system2004
Professor T. Martin Embley FMedSci FRS
Analysis of the sulfate-reducing bacterial and methanogenic archaeal populations in contrasting Antarctic sediments2003
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
Biochemical and genetic evidence for a family of heterotrimeric G-proteins in Trichomonas vaginalis2003
Professor T. Martin Embley FMedSci FRS
Fungal hydrogenosomes contain mitochondrial heat-shock proteins2003
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
Horizontal gene transfer and the evolution of parasitic protozoa2003
Professor T. Martin Embley FMedSci FRS
Mitochondria and hydrogenosomes are two forms of the same fundamental organelle2003
Professor T. Martin Embley FMedSci FRS
Phylogenetic analyses of diplomonad genes reveal frequent lateral gene transfers affecting eukaryotes2003
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
A mitochondrial remnant in the microsporidian Trachipleistophora hominis2002
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
A novel potential surface protein in Trichomonas vaginalis contains a leucine-rich repeat shared by micro-organisms from all three domains of life2002
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
A novel potential surface protein in Trichomonas vaginalis contains a leucine-rich repeat shared by micro-organisms from all three domains of life2002
Professor T. Martin Embley FMedSci FRS
An [Fe] hydrogenase from the anaerobic hydrogenosome-containing fungus Neocallimastix frontalis L22002
Professor T. Martin Embley FMedSci FRS
Anaerobic eukaryotes and their archaebacterial endosymbionts2002
Professor T. Martin Embley FMedSci FRS
Conserved properties of hydrogenosomal and mitochondrial ADP/ATP carriers: a common origin for both organelles2002
Professor T. Martin Embley FMedSci FRS
Cultivation-based and molecular approaches to characterisation of terrestrial and aquatic nitrifiers2002
Professor T. Martin Embley FMedSci FRS
Fructose-1,6-bisphosphate aldolases in amitochondriate protists constitute a single protein subfamily with eubacterial relationships2002
Professor T. Martin Embley FMedSci FRS
Grassland Management Regimens Reduce Small-Scale Heterogeneity and Species Diversity of beta-Proteobacterial Ammonia Oxidizer Populations2002
Professor T. Martin Embley FMedSci FRS
Iron hydrogenases, ancient enzymes in modern eukaryotes2002
Professor T. Martin Embley FMedSci FRS
The distribution and activity of sulphate reducing bacteria in estuarine and coastal marine sediments2002
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
The diversity and evolution of thioredoxin reductase: new perspectives2002
Professor Robert Hirt
Dr Katalin Kovacs
Professor T. Martin Embley FMedSci FRS
The ribulose-1,5-bisphosphate carboxylase/oxygenase gene cluster of Methylococcus capsulatus (Bath)2002
Professor T. Martin Embley FMedSci FRS
Chaperonin 60 phylogeny provides further evidence of secondary loss of mitochondria among putative early-branching eukaryotes2001
Professor T. Martin Embley FMedSci FRS
Species Diversity of Uncultured and Cultured Populations of Soil and Marine Ammonia Oxidizing Bacteria2001
Professor T. Martin Embley FMedSci FRS
Unique phylogenetic relationships of glucokinase and glucosephosphate isomerase of the amitochondriate eukaryotes Giardia intestinalis, Spironucleus barkhanus and Trichomonas vaginalis2001
Professor T. Martin Embley FMedSci FRS
Use of 16S rRNA-targeted oligonucleotide probes to investigate the distribution of sulphate-reducing bacteria in estuarine sediments2001
Professor T. Martin Embley FMedSci FRS
Iron hydrogenases and the evolution of anaerobic eukaryotes2000
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
A single eubacterial origin of eukaryotic pyruvate: ferredoxin oxidoreductase genes: implications for the evolution of anaerobic eukaryotes1999
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
Microsporidia are related to Fungi: evidence from the largest subunit of RNA polymerase II and other proteins1999
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
Microsporidia are related to Fungi: Evidence from the largest subunit of RNA polymerase II and other proteins1999
Professor T. Martin Embley FMedSci FRS
Professor Robert Hirt
Early branching eukaryotes?1998
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
Molecular and cellular evolution of ciliates: a phylogenetic perspective1998
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
Molecular phylogeny of Trichomonads and Naegleria: implication for the relative timing of the mitochondrion endosymbiosis1998
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
A mitochondrial Hsp70 orthologue in Vairimorpha necatrix: molecular evidence that microsporidia once contained mitochondria1997
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
A mitochondrial-like targeting signal on the hydrogenosomal malic enzyme from the anaerobic fungus Neocallimastix frontalis: support for the hypothesis that hydrogenosomes are modified mitochondria1997
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
Molecular data suggest an early acquisition of the mitochondrion endosymbiont1996
Professor T. Martin Embley FMedSci FRS
Professor Robert Hirt
Multiple origins of anaerobic ciliates with hydrogenosomes within the radiation of aerobic ciliates1995
Professor Robert Hirt
Professor T. Martin Embley FMedSci FRS
Phylogenetic relationships among karyorelictids and heterotrichs inferred from small subunit rRNA sequences: resolution at the base of the ciliate tree1995
Professor T. Martin Embley FMedSci FRS
Professor Robert Hirt
Biodiversity at the molecular level: the domains, kingdoms and phyla of life1994
Professor T. Martin Embley FMedSci FRS
Professor Robert Hirt
Some rumen ciliates have endosymbiotic methanogens1994
Professor Ian Head
Professor T. Martin Embley FMedSci FRS
The Phylogeny of autotrophic ammonia-oxidising bacteria as determined by analysis of 16S ribosomal RNA gene sequences.1993