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Browsing publications by Dr Jennifer Hallinan.

Newcastle AuthorsTitleYearFull text
Dr Goksel Misirli
Professor Anil Wipat
Dr Jennifer Hallinan
Modelling the fitness landscapes of a SCRaMbLEd yeast genome2022
Dr Jennifer Hallinan
Professor Anil Wipat
Professor Simon Woods
Dr Kenneth Taylor
Dr Angel Goni-Moreno
et al.
Future-Proofing Synthetic Biology: Educating the Next Generation2019
Dr Katherine James
Dr Simon Cockell
Dr Colin Gillespie
Dr Jennifer Hallinan
Dr Francesca Barone
et al.
B-cell activity markers are associated with different disease activity domains in primary Sjögren's syndrome2018
James Skelton
Dr Jennifer Hallinan
Sunny Park
Professor Anil Wipat
Computational intelligence for metabolic pathway design: Application to the pentose phosphate pathway2016
Dr Goksel Misirli
Dr Jennifer Hallinan
Dr Phillip Lord
James Alastair McLaughlin McLaughlin
Professor Anil Wipat
et al.
Data Integration and Mining for Synthetic Biology Design2016
Professor Anil Wipat
Dr Jennifer Hallinan
Engineering bacterial populations for pattern formation2016
Dr Curtis Madsen
James Alastair McLaughlin McLaughlin
Dr Goksel Misirli
Dr Keith Flanagan
Dr Jennifer Hallinan
et al.
The SBOL Stack: A Platform for Storing, Publishing, and Sharing Synthetic Biology Designs2016
Dr Katherine James
Shereen Al-Ali
Dr Jessica Tarn
Dr Simon Cockell
Dr Colin Gillespie
et al.
A Transcriptional Signature of Fatigue Derived from Patients with Primary Sjögren’s Syndrome2015
Shereen Al-Ali
Dr Jessica Tarn
Dr Simon Cockell
Dr Colin Gillespie
Professor John Isaacs
et al.
Gene Set Enrichment Analysis Across Multiple Expression Studies Reveals a Core Subset of Primary Sjögren's Syndrome-Related Genes2015
Professor Fai Ng
Professor Anil Wipat
Dr Jennifer Hallinan
Integrative Network-Based Analysis of the Primary Sjogren's Syndrome Transcriptome between Human and Mouse2015
Professor Fai Ng
Dr Jennifer Hallinan
Machine Learning of Fatigue-Related Clinical Features in Primary Sjogren's Syndrome2015
Dr Keith Flanagan
Dr Simon Cockell
Professor Colin Harwood
Dr Jennifer Hallinan
Dr Sirintra Nakjang
et al.
A distributed computational search strategy for the identification of diagnostics targets: Application to finding aptamer targets for methicillin-resistant staphylococci2014
Dr Goksel Misirli
Dr Jennifer Hallinan
Professor Anil Wipat
BacillusRegnet: a transcriptional regulation database and analysis platform for Bacillus species2014
Dr Goksel Misirli
Dr Jennifer Hallinan
Professor Anil Wipat
Composable modular models for synthetic biology2014
Dr Goksel Misirli
Dr Jennifer Hallinan
Professor Anil Wipat
Composable Modular Models for Synthetic Biology2014
Dr Katherine James
Dr Jessica Tarn
Shereen Al-Ali
Dr Jennifer Hallinan
Professor David Young
et al.
Integration of Gene Expression Data with Interaction and Annotation Data Reveals Patterns of Connection Between Primary Sjögren’s Syndrome Associated Genes and Immune Processes2014
Julija Rusakovica
Dr Jennifer Hallinan
Professor Anil Wipat
Dr Paolo Zuliani
Probabilistic Latent Semantic Analysis Applied to Whole Bacterial Genomes Identifies Common Genomic Features2014
Dr Matthew Pocock
Dr Jennifer Hallinan
Dr Goksel Misirli
Professor Anil Wipat
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology2014
Dr Jennifer Hallinan
Owen Gilfellon
Dr Goksel Misirli
Professor Anil Wipat
Tuning Receiver Characteristics in Bacterial Quorum Communication: An Evolutionary Approach Using Standard Virtual Biological Parts2014
Dr Goksel Misirli
Professor Anil Wipat
Joseph Mullen
Dr Katherine James
Dr Matthew Pocock
et al.
BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology2013
Dr Jennifer Hallinan
Computational Intelligence in the Design of Synthetic Microbial Genetic Systems2013
Jochen Weile
Dr Katherine James
Dr Jennifer Hallinan
Dr Simon Cockell
Dr Phillip Lord
et al.
Bayesian integration of networks without gold standards2012
Dr Jennifer Hallinan
Sungshic Park
Professor Anil Wipat
Bridging the Gap Between Design and Reality: A Dual Evolutionary Strategy for the Design of Synthetic Genetic Circuits2012
Dr Jennifer Hallinan
Data mining for microbiologists2012
Dr Katherine James
Professor Anil Wipat
Dr Jennifer Hallinan
Is newer better?-evaluating the effects of data curation on integrated analyses in Saccharomyces cerevisiae2012
Dr Keith Flanagan
Dr Sirintra Nakjang
Dr Jennifer Hallinan
Professor Colin Harwood
Professor Robert Hirt
et al.
Microbase2.0: a generic framework for computationally intensive bioinformatics workflows in the cloud2012
Dr Sophie Weatherhead
Professor Peter Farr
Dr David Jamieson
Dr Jennifer Hallinan
Dr James Lloyd
et al.
Apoptosis of keratinocytes is a key mechanism in UVB-induced clearance of psoriasis2011
Dr Goksel Misirli
Dr Jennifer Hallinan
Dr Matthew Pocock
Dr Simon Cockell
Jochen Weile
et al.
BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology2011
Jochen Weile
Dr Matthew Pocock
Dr Simon Cockell
Dr Phillip Lord
James Dewar
et al.
Customizable views on semantically integrated networks for systems biology2011
Dr Sophie Weatherhead
Professor Peter Farr
Dr David Jamieson
Dr Jennifer Hallinan
Dr James Lloyd
et al.
Keratinocyte Apoptosis in Epidermal Remodeling and Clearance of Psoriasis Induced by UV Radiation2011
Dr Goksel Misirli
Dr Jennifer Hallinan
Professor Anil Wipat
Model annotation for synthetic biology: automating model to nucleotide sequence conversion2011
Dr Katherine James
Professor Anil Wipat
Dr Jennifer Hallinan
Multiple Gold Standards Address Bias in Functional Network Integration2011
Dr Jennifer Hallinan
Dr Katherine James
Professor Anil Wipat
Network Approaches to the Functional Analysis of Microbial Proteins2011
Dr Sophie Weatherhead
Professor Peter Farr
Dr Jennifer Hallinan
Professor Anil Wipat
Professor Nick Reynolds
et al.
Development of a dynamic mathematical model of epidermis reveals critical importance of increasing the proportion of both cycling stem and transient amplifying cells, in the development of psoriatic plaques2010
Dr Jennifer Hallinan
Dr Goksel Misirli
Professor Anil Wipat
Evolutionary computation for the design of a stochastic switch for synthetic genetic circuits2010
Dr Joao Passos
Dr Glyn Nelson
Dr Cedric Simillion
Dr Carole Proctor
Dr Satomi Miwa
et al.
Feedback between p21 and reactive oxygen production is necessary for cell senescence2010
Dr Goksel Misirli
Dr Jennifer Hallinan
Professor Anil Wipat
Standard virtual biological parts: a repository of modular modeling components for synthetic biology2010
Dr Joao Passos
Dr Cedric Simillion
Dr Jennifer Hallinan
Professor Anil Wipat
Professor Thomas von Zglinicki
et al.
Cellular senescence: Unravelling complexity2009
Dr Jennifer Hallinan
Dr Matthew Pocock
Dr Stephen Addinall
Professor David Lydall
Professor Anil Wipat
et al.
Clustering incorporating shortest paths identifies relevant modules in functional interaction networks2009
Dr Jennifer Hallinan
Evolving gene regulatory networks2009
Dr Katherine James
Professor Anil Wipat
Dr Jennifer Hallinan
Integration of full-coverage probabilistic functional networks with relevance to specific biological processes2009
Dr Katherine James
Professor Anil Wipat
Dr Jennifer Hallinan
Integration of full-coverage probabilistic functional networks with relevance to specific biological processes2009
Dr Stephen Addinall
Dawn Downey
Dr Min Yu
Dr Mikhajlo Zubko
James Dewar
et al.
A Genome-wide Suppressor and Enhancer Analysis of cdc13-1 Reveals Varied Cellular Processes Influencing Telomere Capping in Saccharomyces cerevisiae2008
Tracy Craddock
Professor Colin Harwood
Dr Jennifer Hallinan
Professor Anil Wipat
e-Science: relieving bottlenecks in large-scale genome analyses2008
Dr Jennifer Hallinan
Professor Anil Wipat
Network Motifs in Context: An Exploration of the Evolution of Oscillatory Dynamics in Transcriptional Networks2008
Dr Jennifer Hallinan
Professor Anil Wipat
Motifs and modules in fractured functional yeast networks2007
Dr Jennifer Hallinan
Professor Anil Wipat
Clustering and cross-talk in a yeast functional interaction network2006
Dr Jennifer Hallinan
Effects of an RNA control layer on the state space of Boolean models of genetic regulatory networks2006
Dr Jennifer Hallinan
Effects of constitutive gene expression on the dynamics of random Boolean netorks2006
Dr Jennifer Hallinan
Antisense Transcription in the Mammalian Transcriptome2005
Dr Jennifer Hallinan
Evolving neural networks for the classification of Malignancy Associated Changes2005
Dr Jennifer Hallinan
Game of Life2005
Dr Jennifer Hallinan
Game Theory2005
Dr Jennifer Hallinan
Network motifs, feedback loops and the dynamics of genetic regulatory networks2005
Dr Jennifer Hallinan
Asynchronous dynamics of an artificial genetic regulatory network2004
Dr Jennifer Hallinan
Cluster analysis of the p53 genetic regulatory network: Topology and biology2004
Dr Jennifer Hallinan
Evolving genetic regulatory networks using an artificial genome2004
Dr Jennifer Hallinan
Gene duplication and hierarchical modularity in intracellular interaction networks2004
Dr Jennifer Hallinan
Evolutionary computation and cognitive science2003
Dr Jennifer Hallinan
Self-organization leads to hierarchical modularity in an internet community2003
Dr Jennifer Hallinan
A comparison of neutral landscapes - NK, NKp and NKq2002
Dr Jennifer Hallinan
Evolutionary Algorithms2002
Dr Jennifer Hallinan
Probing the persistent question marks2001
Dr Jennifer Hallinan
Selection procedures for module discovery: Exploring evolutionary algorithms for cognitive science2001
Dr Jennifer Hallinan
Effects of damage to the CDM Stroop model2000
Dr Jennifer Hallinan
Feature selection and classification in the diagnosis of cervical cancer2000
Dr Jennifer Hallinan
Modelling the spread of antibiotic resistance2000
Dr Jennifer Hallinan
Stroop performance in Alzheimer's disease: A preliminary test of theories of damage using a connectionist simulation2000