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Browsing publications by Professor Neil Boonham.

Newcastle AuthorsTitleYearFull text
Ines Vazquez Iglesias
Professor Neil Boonham
Dr Ian Adams
A novel high-throughput sequencing approach reveals the presence of a new virus infecting Rosa: rosa ilarvirus-1 (RIV-1)2022
Professor Neil Boonham
A primer on the analysis of high‐throughput sequencing data for detection of plant viruses2021
Professor Neil Boonham
Genomics informed design of a suite of real-time PCR assays for the specific detection of each Xylella fastidiosa subspecies2021
Professor Neil Boonham
Historical and recent tomato black ring virus and beet ringspot virus isolate genomes reveal interspecies recombination and plant health regulation inconsistencies2021
Professor Neil Boonham
Dr Ian Adams
Historical virus isolate collections: An invaluable resource connecting plant virology’s pre-sequencing and post-sequencing eras2021
Dr Nawaporn Onkokesung
Dr Sarah Sommer
Dr Thomas Howard
Alex Laverick
Professor Neil Boonham
et al.
Plant pest surveillance: from satellites to molecules2021
Dr Nawaporn Onkokesung
Professor Neil Boonham
Professor Robert Edwards
Target-Site and Non-target-Site Resistance Mechanisms Confer Multiple and Cross- Resistance to ALS and ACCase Inhibiting Herbicides in Lolium rigidum From Spain2021
Dimitrios Petsopoulos
Jennifer Bell
Dr James Kitson
Professor Neil Boonham
Professor Darren Evans
et al.
Using network ecology to understand and mitigate long-term insect declines2021
Professor Neil Boonham
A pond-side test for Guinea worm: Development of a loop-mediated isothermal amplification (LAMP) assay for detection of Dracunculus medinensis2020
Professor Steve Juggins
Professor Neil Boonham
Corrigendum to “Development of a novel metric for evaluating diatom assemblages in rivers using DNA metabarcoding” [Ecol. Indic. (2020) 106725] (Ecological Indicators (2020) 118, (S1470160X20306622), (10.1016/j.ecolind.2020.106725))2020
Professor Steve Juggins
Professor Neil Boonham
Development of a novel metric for evaluating diatom assemblages in rivers using DNA metabarcoding2020
Professor Neil Boonham
Biological and Molecular Properties of Wild potato mosaic virus Isolates from Pepino (Solanum muricatum)2019
Dr Ian Adams
Professor Neil Boonham
Complete coding sequence of Andean potato mottle virus from a 40-year-old sample from Peru2019
Professor Neil Boonham
Dr Ian Adams
Genomic sequence and host range studies reveal considerable variation within the species Arracacha virus B2019
Ines Vazquez Iglesias
Dr Ian Adams
Jone Santin Azcona
Professor Neil Boonham
High throughput sequencing and RT-qPCR assay reveal the presence of rose cryptic virus-1 in the United Kingdom2019
Dr Ian Adams
Professor Neil Boonham
A 33-year-old plant sample contributes the first complete genomic sequence of Potato Virus U2018
Professor Neil Boonham
A Loop-mediated Isothermal Amplification (LAMP) Assay for Rapid Identification of Bemisia tabaci2018
Professor Neil Boonham
Application of HTS for Routine Plant Virus Diagnostics: State of the Art and Challenges2018
Professor Neil Boonham
Complete genome sequence of Potato virus T from Bolivia, obtained from a 33-year-old sample2018
Professor Neil Boonham
Complete genomic sequence of the potyvirus mashua virus Y, obtained from a 33-year-old mashua (Tropaeaolum tuberosum) sample2018
Dr Sara Franco Ortega
Professor Neil Boonham
Development of loop-mediated isothermal amplification assays for the detection of seedborne fungal pathogens Fusarium fujikuroi and Magnaporthe oryzae in rice seed2018
Professor Neil Boonham
Dispersal of harmful fruit fly pests by international trade and a loop-mediated isothermal amplification assay to prevent their introduction2018
Professor Neil Boonham
From laboratory to point of entry: Development and implementation of a loop-mediated isothermal amplification (LAMP)-based genetic identification system to prevent introduction of quarantine insect species2018
Professor Neil Boonham
Full-genome sequencing of a virus from a 33-year-old sample demonstrates that Arracacha mottle virus is synonymous with Arracacha virus Y2018
Professor Neil Boonham
High-Throughput Sequencing Facilitates Characterization of a “Forgotten” Plant Virus: The Case of a Henbane Mosaic Virus Infecting Tomato2018
Professor Neil Boonham
High-throughput sequencing technologies for plant pest diagnosis: challenges and opportunities2018
Professor Neil Boonham
Erin Lewis
Needle in a haystack? A comparison of eDNA metabarcoding and targeted qPCR for detection of the great crested newt (Triturus cristatus)2018
Professor Neil Boonham
Prospects and challenges of environmental DNA (eDNA) monitoring in freshwater ponds2018
Dr Sara Franco Ortega
Professor Neil Boonham
Rapid detection of Fusarium oxysporum f. sp. lactucae on soil, lettuce seeds and plants using loop-mediated isothermal amplification2018
Professor Giles Budge
Professor Neil Boonham
Rapid molecular methods for in-field and laboratory identification of the yellow-legged Asian hornet (Vespa velutina nigrithorax)2018
Professor Neil Boonham
Professor Michael Kehoe
The biology and phylogenetics of potato virus s isolates from the andean region of south America2018
Professor Neil Boonham
The impact of high throughput sequencing on plant health diagnostics2018
Professor Neil Boonham
Using high-throughput sequencing in support of a plant health outbreak reveals novel viruses in Ullucus tuberosus (Basellaceae)2018
Professor Neil Boonham
A TaqMan real-time PCR assay for Rhizoctonia cerealis and its use in wheat and soil2017
Professor Neil Boonham
Complete sequence and genomic annotation of carrot torradovirus 12017
Professor Neil Boonham
Evaluation and validation of a loop-mediated isothermal amplification test kit for detection of Hymenoscyphus fraxineus2017
Professor Neil Boonham
First complete genome sequence of Arracacha virus A isolated from a 38-year-old sample from Peru2017
Professor Neil Boonham
First report of Carrot torradovirus 1 (CaTV1), a member of the Torradovirus genus, infecting carrots in France2017
Professor Neil Boonham
Investigating the viral causes of internal necrosis in carrot2017
Professor Giles Budge
Professor Neil Boonham
Microsporidia infection impacts the host cells cycle and reduces cell apoptosis2017
Professor Neil Boonham
Next generation sequencing for detection and discovery of plant viruses and viroids: Comparison of two approaches2017
Professor Neil Boonham
The effects of surface structure mutations in Arabidopsis thaliana on the polarization of reflections from virus-infected leaves2017
Rebecca Stafford
Professor Neil Boonham
Professor Rick Mumford
Professor Robert Edwards
Transcriptome sequencing identifies novel persistent viruses inherbicide resistant wild-grasses2017
Professor Neil Boonham
Detection and transmission of Carrot torrado virus, a novel putative member of the Torradovirus genus2016
Professor Neil Boonham
DNA barcoding for biosecurity: case studies from the UK plant protection programme2016
Professor Neil Boonham
Evidence for different host-dependent functioning of RX against both wild-type and recombinant pepino mosaic virus2016
Professor Neil Boonham
Fourier transform infra-red spectroscopy using an attenuated total reflection probe to distinguish between Japanese larch, pine and citrus plants in healthy and diseased states2016
Professor Giles Budge
Professor Neil Boonham
Identifying bacterial predictors of honey bee health2016
Professor Neil Boonham
Molecular and biological characterisation of two novel pomo-like viruses associated with potato (Solanum tuberosum) fields in Colombia2016
Professor Neil Boonham
Molecular and biological characterization of Potato mop-top virus (PMTV, Pomovirus) isolates from the potato-growing regions of Colombia2016
Professor Neil Boonham
The effect of post-harvest storage conditions on the development of black dot (Colletotrichum coccodes) on potato in crops grown for different durations2016
Professor Neil Boonham
The effects of plant virus infection on polarization reflection from leaves2016
Professor Rick Mumford
Professor Neil Boonham
The role and challenges of new diagnostic technology in plant biosecurity2016
Professor Neil Boonham
A pathogenicity determinant maps to the N-terminal coat protein region of the Pepino mosaic virus genome2015
Professor Neil Boonham
Development of a lateral flow device for in-field detection and evaluation of PCR-based diagnostic methods for Xanthomonas campestris pv. musacearum, the causal agent of banana xanthomonas wilt2015
Professor Neil Boonham
LAMP assay and rapid sample preparation method for on-site detection of flavescence dorée phytoplasma in grapevine2015
Professor Neil Boonham
Microarray platform for the detection of a range of plant viruses and viroids2015
Professor Neil Boonham
Rapid, specific, simple, in-field detection of Xanthomonas campestris pathovar musacearum by loop-mediated isothermal amplification2015
Professor Neil Boonham
Real-Time LAMP for Chalara fraxinea Diagnosis2015
Professor Neil Boonham
Carrot yellow leaf virus is associated with carrot internal necrosis2014
Professor Neil Boonham
First report of maize lethal necrosis disease in Rwanda2014
Professor Neil Boonham
Genome sequence of vanilla distortion mosaic virus infecting Coriandrum sativum2014
Professor Neil Boonham
Influence of the length of target DNA overhang proximal to the array surface on discrimination of single-base mismatches on a 25-mer oligonucleotide array2014
Professor Neil Boonham
Methods in virus diagnostics: From ELISA to next generation sequencing2014
Professor Neil Boonham
The complete genome sequence of Piper yellow mottle virus (PYMoV)2014
Professor Neil Boonham
The complete genome sequences of two isolates of potato black ringspot virus and their relationship to other isolates and nepoviruses2014
Professor Neil Boonham
Professor Rick Mumford
The development of monoclonal antibodies to the secA protein of Cape St. Paul wilt disease phytoplasma and their evaluation as a diagnostic tool2014
Professor Neil Boonham
Erwinia amylovora loop-mediated isothermal amplification (LAMP) assay for rapid pathogen detection and on-site diagnosis of fire blight2013
Professor Neil Boonham
A loop-mediated isothermal amplification-based method for confirmation of Guignardia citricarpa in citrus black spot lesions2013
Professor Neil Boonham
A new quantitative real-time PCR assay for Rhizoctonia solani AG3-PT and the detection of AGs of Rhizoctonia solani associated with potato in soil and tuber samples in Great Britain2013
Professor Neil Boonham
Complete genome sequence of arracacha virus B: A novel cheravirus2013
Professor Neil Boonham
Genomics-informed design of loop-mediated isothermal amplification for detection of phytopathogenic Xanthomonas arboricola pv. pruni at the intraspecific level2013
Professor Neil Boonham
High throughput real-time RT-PCR assays for specific detection of cassava brown streak disease causal viruses, and their application to testing of planting material2013
Professor Neil Boonham
Loop-mediated isothermal amplification for rapid detection of the causal agents of cassava brown streak disease2013
Professor Neil Boonham
The plant viruses and viroids database and collections of Q-bank2013
Professor Neil Boonham
Use of loop-mediated isothermal ampliflcation for detection of Ophiostoma clavatum, the primary blue stain fungus associated with Ips acuminatus2013
Professor Rick Mumford
Professor Neil Boonham
Use of next-generation sequencing for the identification and characterization of Maize chlorotic mottle virus and Sugarcane mosaic virus causing maize lethal necrosis in kenya2013
Professor Giles Budge
Professor Neil Boonham
A new large scale soil DNA extraction procedure and real-time PCR assay for the detection of Sclerotium cepivorum in soil2012
Professor Neil Boonham
A review of pest surveillance techniques for detecting quarantine pests in Europe2012
Professor Neil Boonham
Co-infection with Cucumber vein yellowing virus and Cucurbit yellow stunting disorder virus leading to synergism in cucumber2012
Professor Neil Boonham
First record of the Q Biotype of the sweetpotato whitefly, Bemisia tabaci, intercepted in the UK2012
Professor Giles Budge
Professor Neil Boonham
Detection of honey bee (Apis mellifera) viruses with an oligonucleotide microarray2011
Professor Neil Boonham
Development of a real-time PCR assay for detection of Phytophthora kernoviae and comparison of this method with a conventional culturing technique2011
Professor Neil Boonham
Use of a real-time LAMP isothermal assay for detecting 16SrII and XII phytoplasmas in fruit and weeds of the Ethiopian Rift Valley2011
Professor Neil Boonham
Aggressive and mild Potato virus Y isolates trigger different specific responses in susceptible potato plants2010
Professor Neil Boonham
Development and evaluation of a one-hour DNA extraction and loop-mediated isothermal amplification assay for rapid detection of phytoplasmas2010
Professor Giles Budge
Professor Neil Boonham
Characterization and origin of infection of Rhizoctonia solani associated with Brassica oleracea crops in the UK2009
Professor Neil Boonham
Professor Giles Budge
Development of protocols for detection of Colletotrichum acutatum and monitoring of strawberry anthracnose using real-time PCR2009
Professor Giles Budge
Professor Neil Boonham
Molecular tools to investigate Rhizoctonia solani distribution in soil2009
Professor Neil Boonham
Professor Rick Mumford
Exploiting generic platform technologies for the detection and identification of plant pathogens2008
Professor Giles Budge
Professor Neil Boonham
Risk assessment procedure for Cucumber Vein Yellowing Virus (CVYV) and Cucurbit Yellow Stunting Disorder Virus (CYSDV) using a real time RT-PCR assay - study of virus levels in the vector Bemisia tabaci2008
Professor Giles Budge
Professor Neil Boonham
RNA2 of Soil-borne cereal mosaic virus is detectable in plants of winter wheat grown from infected seeds2008
Professor Giles Budge
Professor Neil Boonham
Development of real-time RT-PCR assays for the detection of Cucumber vein yellowing virus (CVYV) and Cucurbit yellow stunting disorder virus (CYSDV) in the whitefly vector Bemisia tabaci2007
Professor Giles Budge
Professor Neil Boonham
Occurrence of two different types of RNA-5-containing beet necrotic yellow vein virus in the UK2007
Professor Rick Mumford
Professor Neil Boonham
Advances in molecular phytodiagnostics - New solutions for old problems2006
Professor Neil Boonham
Host range studies for Tomato chlorosis virus, and Cucumber vein yellowing virus transmitted by Bemisia tabaci (Gennadius)2006
Professor Neil Boonham
Potato virus Y from petunia can cause symptoms of potato tuber necrotic ringspot disease (PTNRD)1999