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Browsing publications by
Professor Andrew Filby.
Newcastle Authors
Title
Year
Full text
Dr Hudaa Gopee
Dr Bayanne Olabi
Chloe Admane
Dr Rachel Botting
Emily Stephenson
et al.
A prenatal skin atlas reveals immune regulation of human skin morphogenesis
2024
Dr Amy Vincent
Dr Chun Chen
Dr Tiago Gomes Bernardino Gomes
Dr Valeria Di Leo
Kamil Pabis
et al.
A stagewise response to mitochondrial dysfunction in mitochondrial DNA maintenance disorders
2024
Dr Luke Milross
Bethany Hunter
Dr David McDonald
George Merces
Dr Amanda Thomson
et al.
Distinct lung cell signatures define the temporal evolution of diffuse alveolar damage in fatal COVID-19
2024
Patricia Pinol Jurado
Jose Verdú-Díaz
Esther Fernández-Simón
Dr Conor Lawless
Dr Amy Vincent
et al.
Imaging mass cytometry analysis of Becker muscular dystrophy muscle samples reveals different stages of muscle degeneration
2024
Bethany Hunter
Dr Ioana Nicorescu
Emma Foster
Dr David McDonald
Dr Gill Hulme
et al.
OPTIMAL: An OPTimized Imaging Mass cytometry AnaLysis framework for benchmarking segmentation and data exploration
2024
Sean Hockney
Carly Knill
Dr David McDonald
Professor Andrew Filby
Dr Deepali Pal
et al.
Protocol for
in vitro
co-culture, proliferation, and cell cycle analyses of patient-derived leukemia cells
2024
Dr Ken Baker
Dr David McDonald
Dr Gill Hulme
Raf Hussain
Dr Jonathan Coxhead
et al.
Single-cell insights into immune dysregulation in rheumatoid arthritis flare versus drug-free remission
2024
Dr Luke Milross
Bethany Hunter
Dr Joaquim Majo
Professor Andrew Filby
Professor Andrew Fisher
et al.
Downregulation of
MALAT1
is a hallmark of tissue and peripheral proliferative T cells in COVID-19
2023
Dr Martina Finetti
Bethany Hunter
Professor Andrew Filby
Dr David McDonald
GBMdeconvoluteR accurately infers proportions of neoplastic and immune cell populations from bulk glioblastoma transcriptomics data
2023
Dr Dino Masic
Kayleigh Fee
Dr Hayden Bell
Marian Case
Juan Ojeda Garcia
et al.
Hyperactive CREB subpopulations increase during therapy in pediatric B-lineage acute lymphoblastic leukemia
2023
Dr Luke Milross
Dr Joaquim Majo
Bethany Hunter
Professor Andrew Filby
Professor Andrew Fisher
et al.
Identification of a protein expression signature distinguishing early from organising diffuse alveolar damage in COVID-19 patients
2023
Dr Chun Chen
Dr David McDonald
Dr Alasdair Blain
Emily Mossman
Kiera Atkin
et al.
Parkinson’s disease neurons exhibit alterations in mitochondrial quality control proteins
2023
Jing Lim
Grace Mallett
Dr David McDonald
Dr Gill Hulme
Dr Stephanie Laba
et al.
Programmed cell death-1 receptor-mediated regulation of Tbet
+
NK1.1
-
innate lymphoid cells within the tumor microenvironment
2023
Dr Kathryn Musgrave
Dr Jonathan Scott
Dr Wezi Sendama
Aaron Gardner
Fiona Dewar
et al.
Tissue factor expression in monocyte subsets during human immunothrombosis, endotoxemia and sepsis
2023
Dr Chun Chen
Emily Mossman
Dr David McDonald
Dr Alasdair Blain
Laura Bone
et al.
Astrocytic Changes in Mitochondrial Oxidative Phosphorylation Protein Levels in Parkinson's Disease
2022
Dr Jack Leslie
Erik Ramon Gil
Kathryn Gilroy
Dr Saimir Luli
Maja Laszczewska
et al.
CXCR2 inhibition enables NASH-HCC immunotherapy
2022
Dr Ugo Offor
Professor Andrew Filby
Dr Milos Ognjanovic
Dr Gareth Parry
Abbas Khushnood
et al.
Defining the systemic immune landscape in children at an increased risk of posttransplant lymphoproliferative disease: The immunology of thymectomy and childhood cardiac transplant (ITHACA) study.
2022
Dan Hipps
Dr Philip Dobson
Dr Charlotte Warren
Dr David McDonald
Andrew Fuller
et al.
Detecting respiratory chain defects in osteoblasts from osteoarthritic patients using imaging mass cytometry
2022
Saskia Bos
Dr Luke Milross
Professor Andrew Filby
Professor Andrew Fisher
Immune processes in the pathogenesis of chronic lung allograft dysfunction: identifying the missing pieces of the puzzle
2022
Dr Luke Milross
Dr Joaquim Majo
Professor Andrew Filby
Professor Andrew Fisher
Post-mortem lung tissue: the fossil record of the pathophysiology and immunopathology of severe COVID-19
2022
Dr Luke Milross
Dr Joaquim Majo
Bethany Hunter
Dr Christopher Duncan
Professor Andrew Filby
et al.
The trajectory of COVID-19 cardiopulmonary disease: insights from an autopsy study of community-based, pre-hospital deaths
2022
Professor Andrew Filby
Biosafety during a pandemic: shared resource laboratories rise to the challenge
2021
Dr Laura Jardine
Dr Simone Webb
Issac Goh
Dr Gary Reynolds
Dr Michael Mather
et al.
Blood and immune development in human fetal bone marrow and Down syndrome
2021
Professor Andrew Filby
Data Driven Cell Cycle Model to Quantify the Efficacy of Cancer Therapeutics Targeting Specific Cell-Cycle Phases From Flow Cytometry Results
2021
Dr Gary Reynolds
Dr Peter Vegh
Dr James Fletcher
Dr Beth Poyner
Dr Emily Stephenson
et al.
Developmental cell programs are co-opted in inflammatory skin disease
2021
Dr Chun Chen
Dr David McDonald
Dr Alasdair Blain
Dr Ashwin Sachdeva
Laura Bone
et al.
Imaging mass cytometry reveals generalised deficiency in OXPHOS complexes in Parkinson’s disease
2021
Dr Rachel Botting
Dr Cecilia Dominguez Conde
Dr Dorin-Mirel Popescu
Dr Emily Stephenson
Dr Simone Webb
et al.
A cell atlas of human thymic development defines T cell repertoire formation
2020
Dr Charlotte Warren
Dr David McDonald
Professor David Deehan
Professor Robert Taylor
Professor Andrew Filby
et al.
Decoding mitochondrial heterogeneity in single muscle fibres by imaging mass cytometry
2020
Dr Urszula Cytlak-Chaudhuri
Dr Anastasia Resteu
Sarah Pagan
Dr Kile Green
Dr Paul Milne
et al.
Differential IRF8 Transcription Factor Requirement Defines Two Pathways of Dendritic Cell Development in Humans
2020
Marian Case
Dr Dino Masic
Dr David Jamieson
Dr Frederik van Delft
Professor Andrew Filby
et al.
Label-Free Leukemia Monitoring by Computer Vision
2020
Rebecca Maier
Dr Bilal Bawamia
Dr Karim Bennaceur
Sarah Dunn
Dr Leanne Marsay
et al.
Telomerase activation to reverse immunosenescence in elderly patients with acute coronary syndrome: Protocol for a randomized pilot trial
2020
Carly Knill
Andrew Fuller
Dr Louise Michaelis
Professor Andrew Filby
Classification of Human White Blood Cells Using Machine Learning for Stain-Free Imaging Flow Cytometry
2019
Professor Andrew Filby
Cyt-Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2018 Conference Workshops
2019
Dr Dorin-Mirel Popescu
Dr Rachel Botting
Dr Emily Stephenson
Dr Kile Green
Dr Simone Webb
et al.
Decoding human fetal liver haematopoiesis
2019
Professor Andrew Filby
Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition)
2019
Professor Andrew Filby
Label-Free Identification of White Blood Cells Using Machine Learning
2019
Dr Laura Jardine
Dr Sarah Wiscombe
Dr Gary Reynolds
Dr David McDonald
Andrew Fuller
et al.
Lipopolysaccharide inhalation recruits monocytes and dendritic cell subsets to the alveolar airspace.
2019
Dr Rachel Botting
Dr Dorin-Mirel Popescu
Dr Roser Vento-Tormo
Emily Stephenson
Dr Kile Green
et al.
Spatiotemporal immune zonation of the human kidney
2019
Dr David McDonald
Dr Lindsay Nicholson
Professor Anne Dickinson
Professor Andrew Filby
Dr Xiao Wang
et al.
Global phenotypic characterisation of human platelet lysate expanded MSCs by high-throughput flow cytometry
2018
Dr Rachel Botting
Dr Emily Stephenson
Dr Ben Barron-Millar
Barbara Innes
Dr Rebecca Payne
et al.
Single-cell reconstruction of the early maternal–fetal interface in humans
2018
Dr Emily Stephenson
Professor Andrew Filby
Dr Steven Lisgo
Emerita Professor Susan Lindsay
Professor Muzlifah Haniffa
et al.
Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors
2018
Dr Shalabh Srivastava
Dr Simon Ramsbottom
Dr Elisa Molinari
Sumaya Alkanderi
Professor Andrew Filby
et al.
A human patient-derived cellular model of Joubert syndrome reveals ciliary defects which can be rescued with targeted therapies
2017
Professor Andrew Filby
An open-source solution for advanced imaging flow cytometry data analysis using machine learning
2017
Professor Andrew Filby
Caveolin-1 Influences LFA-1 Redistribution upon TCR Stimulation in CD8 T Cells
2017
Professor Andrew Filby
Guidelines for the use of flow cytometry and cell sorting in immunological studies
2017
Professor Andrew Filby
Reconstructing cell cycle and disease progression using deep learning
2017
Dr Gary Reynolds
James Fletcher
Dr Laura Jardine
David Dixon
Dr Emily Stephenson
et al.
Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors
2017
Professor Andrew Filby
The Analysis of Cell Cycle, Proliferation, and Asymmetric Cell Division by Imaging Flow Cytometry
2017
Professor Andrew Filby
Frequency and Dynamics of Leukemia-Initiating Cells during Short-term
Ex Vivo
Culture Informs Outcomes in Acute Myeloid Leukemia Patients
2016
Professor Andrew Filby
Label-free cell cycle analysis for high-throughput imaging flow cytometry
2016
Dr Deepali Pal
Dr Helen Blair
Dr Alex Elder
Katie Dormon
Dr Kate Rennie
et al.
Long-term
in vitro
maintenance of clonal abundance and leukaemia-initiating potential in acute lymphoblastic leukaemia
2016
Professor Andrew Filby
Sample preparation for flow cytometry benefits from some lateral thinking
2016
Professor Andrew Filby
Stepwise B-cell-dependent expansion of T helper clonotypes diversifies the T-cell response
2016
Professor Andrew Filby
An Imaging Flow Cytometry-based approach to analyse the fission yeast cell cycle in fixed cells
2015
Jaki Hodgson
Professor Andrew Filby
An imaging flow cytometry-based approach to measuring the spatiotemporal calcium mobilisation in activated T cells
2015
Professor Andrew Filby
Appraising the suitability of succinimidyl and lipophilic fluorescent dyes to track proliferation in non-quiescent cells by dye dilution
2015
Professor Andrew Filby
New, clear fusion from the cellular perspective: Measuring cellular fusion in
Saccharomyces cerevisiae
by flow cytometry
2015
Professor Andrew Filby
"Mega" cytometry for a "mega" challenging cell type
2014
Professor Andrew Filby
A method for evaluating the use of fluorescent dyes to track proliferation in cell lines by dye dilution
2013
Professor Andrew Filby
Interleukins 5 and 13 characterize immune responses to respiratory sensitizing acid anhydrides
2002