Dr Hudaa Gopee Dr Bayanne Olabi Chloe Admane Dr Rachel Botting Emily Stephenson et al. | A prenatal skin atlas reveals immune regulation of human skin morphogenesis | 2024 |
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Dr Amy Vincent Dr Chun Chen Dr Tiago Gomes Bernardino Gomes Dr Valeria Di Leo Kamil Pabis et al. | A stagewise response to mitochondrial dysfunction in mitochondrial DNA maintenance disorders | 2024 |
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Dr Luke Milross Bethany Hunter Dr David McDonald George Merces Dr Amanda Thomson et al. | Distinct lung cell signatures define the temporal evolution of diffuse alveolar damage in fatal COVID-19 | 2024 |
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Dr Saskia Bos Bethany Hunter Dr David McDonald George Merces Georgia Sheldon et al. | High-dimensional tissue profiling of immune cell responses in chronic lung allograft dysfunction | 2024 |
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Patricia Pinol Jurado Jose Verdú-Díaz Esther Fernández-Simón Dr Conor Lawless Dr Amy Vincent et al. | Imaging mass cytometry analysis of Becker muscular dystrophy muscle samples reveals different stages of muscle degeneration | 2024 |
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Bethany Hunter Dr Ioana Nicorescu Emma Foster Dr David McDonald Dr Gill Hulme et al. | OPTIMAL: An OPTimized Imaging Mass cytometry AnaLysis framework for benchmarking segmentation and data exploration | 2024 |
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Sean Hockney Carly Knill Dr David McDonald Professor Andrew Filby Dr Deepali Pal et al. | Protocol for in vitro co-culture, proliferation, and cell cycle analyses of patient-derived leukemia cells | 2024 |
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Dr Ken Baker Dr David McDonald Dr Gill Hulme Raf Hussain Dr Jonathan Coxhead et al. | Single-cell insights into immune dysregulation in rheumatoid arthritis flare versus drug-free remission | 2024 |
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Dr Domenico Somma Professor John Isaacs Professor Andrew Filby Dr David McDonald Dr JASMINE Sim et al. | Synovial tissue myeloid dendritic cell subsets exhibit distinct tissue-niche localization and function in health and rheumatoid arthritis | 2024 |
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Dr Luke Milross Bethany Hunter Dr Joaquim Majo Professor Andrew Filby Professor Andrew Fisher et al. | Downregulation of MALAT1 is a hallmark of tissue and peripheral proliferative T cells in COVID-19 | 2023 |
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Dr Martina Finetti Bethany Hunter Professor Andrew Filby Dr David McDonald
| GBMdeconvoluteR accurately infers proportions of neoplastic and immune cell populations from bulk glioblastoma transcriptomics data | 2023 |
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Dr Dino Masic Kayleigh Fee Dr Hayden Bell Marian Case Juan Ojeda Garcia et al. | Hyperactive CREB subpopulations increase during therapy in pediatric B-lineage acute lymphoblastic leukemia | 2023 |
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Dr Luke Milross Dr Joaquim Majo Bethany Hunter Professor Andrew Filby Professor Andrew Fisher et al. | Identification of a protein expression signature distinguishing early from organising diffuse alveolar damage in COVID-19 patients | 2023 |
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Dr Chun Chen Dr David McDonald Dr Alasdair Blain Emily Mossman Kiera Atkin et al. | Parkinson’s disease neurons exhibit alterations in mitochondrial quality control proteins | 2023 |
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Jing Xuan Lim Grace Mallett Dr David McDonald Dr Gill Hulme Dr Stephanie Laba et al. | Programmed cell death-1 receptor-mediated regulation of Tbet+NK1.1- innate lymphoid cells within the tumor microenvironment | 2023 |
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Dr Kathryn Musgrave Dr Jonathan Scott Dr Wezi Sendama Aaron Gardner Fiona Dewar et al. | Tissue factor expression in monocyte subsets during human immunothrombosis, endotoxemia and sepsis | 2023 |
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Dr Chun Chen Emily Mossman Dr David McDonald Dr Alasdair Blain Laura Bone et al. | Astrocytic Changes in Mitochondrial Oxidative Phosphorylation Protein Levels in Parkinson's Disease | 2022 |
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Dr Jack Leslie Erik Ramon Gil Kathryn Gilroy Dr Saimir Luli Maja Laszczewska et al. | CXCR2 inhibition enables NASH-HCC immunotherapy | 2022 |
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Dr Ugo Offor Professor Andrew Filby Dr Milos Ognjanovic Dr Gareth Parry Abbas Khushnood et al. | Defining the systemic immune landscape in children at an increased risk of posttransplant lymphoproliferative disease: The immunology of thymectomy and childhood cardiac transplant (ITHACA) study. | 2022 |
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Dan Hipps Dr Philip Dobson Dr Charlotte Warren Dr David McDonald Andrew Fuller et al. | Detecting respiratory chain defects in osteoblasts from osteoarthritic patients using imaging mass cytometry | 2022 |
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Saskia Bos Dr Luke Milross Professor Andrew Filby Professor Andrew Fisher
| Immune processes in the pathogenesis of chronic lung allograft dysfunction: identifying the missing pieces of the puzzle | 2022 |
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Dr Luke Milross Dr Joaquim Majo Professor Andrew Filby Professor Andrew Fisher
| Post-mortem lung tissue: the fossil record of the pathophysiology and immunopathology of severe COVID-19 | 2022 |
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Dr Luke Milross Dr Joaquim Majo Bethany Hunter Dr Christopher Duncan Professor Andrew Filby et al. | The trajectory of COVID-19 cardiopulmonary disease: insights from an autopsy study of community-based, pre-hospital deaths | 2022 |
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Professor Andrew Filby
| Biosafety during a pandemic: shared resource laboratories rise to the challenge | 2021 |
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Dr Laura Jardine Dr Simone Webb Issac Goh Kai'en Dr Gary Reynolds Dr Michael Mather et al. | Blood and immune development in human fetal bone marrow and Down syndrome | 2021 |
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Professor Andrew Filby
| Data Driven Cell Cycle Model to Quantify the Efficacy of Cancer Therapeutics Targeting Specific Cell-Cycle Phases From Flow Cytometry Results | 2021 |
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Dr Gary Reynolds Dr Peter Vegh Dr James Fletcher Dr Beth Poyner Dr Emily Stephenson et al. | Developmental cell programs are co-opted in inflammatory skin disease | 2021 |
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Dr Chun Chen Dr David McDonald Dr Alasdair Blain Dr Ashwin Sachdeva Laura Bone et al. | Imaging mass cytometry reveals generalised deficiency in OXPHOS complexes in Parkinson’s disease | 2021 |
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Dr Rachel Botting Dr Cecilia Dominguez Conde Dr Dorin-Mirel Popescu Dr Emily Stephenson Dr Simone Webb et al. | A cell atlas of human thymic development defines T cell repertoire formation | 2020 |
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Dr Charlotte Warren Dr David McDonald Professor David Deehan Professor Robert Taylor Professor Andrew Filby et al. | Decoding mitochondrial heterogeneity in single muscle fibres by imaging mass cytometry | 2020 |
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Dr Urszula Cytlak-Chaudhuri Dr Anastasia Resteu Sarah Pagan Dr Kile Green Dr Paul Milne et al. | Differential IRF8 Transcription Factor Requirement Defines Two Pathways of Dendritic Cell Development in Humans | 2020 |
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Marian Case Dr Dino Masic Dr David Jamieson Dr Frederik van Delft Professor Andrew Filby et al. | Label-Free Leukemia Monitoring by Computer Vision | 2020 |
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Rebecca Maier Dr Bilal Bawamia Dr Karim Bennaceur Sarah Dunn Dr Leanne Marsay et al. | Telomerase activation to reverse immunosenescence in elderly patients with acute coronary syndrome: Protocol for a randomized pilot trial | 2020 |
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Carly Knill Andrew Fuller Dr Louise Michaelis Professor Andrew Filby
| Classification of Human White Blood Cells Using Machine Learning for Stain-Free Imaging Flow Cytometry | 2019 |
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Professor Andrew Filby
| Cyt-Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2018 Conference Workshops | 2019 |
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Dr Dorin-Mirel Popescu Dr Rachel Botting Dr Emily Stephenson Dr Kile Green Dr Simone Webb et al. | Decoding human fetal liver haematopoiesis | 2019 |
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Professor Andrew Filby
| Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition) | 2019 |
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Professor Andrew Filby
| Label-Free Identification of White Blood Cells Using Machine Learning | 2019 |
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Dr Laura Jardine Dr Sarah Wiscombe Dr Gary Reynolds Dr David McDonald Andrew Fuller et al. | Lipopolysaccharide inhalation recruits monocytes and dendritic cell subsets to the alveolar airspace. | 2019 |
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Dr Rachel Botting Dr Dorin-Mirel Popescu Dr Roser Vento-Tormo Emily Stephenson Dr Kile Green et al. | Spatiotemporal immune zonation of the human kidney | 2019 |
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Dr David McDonald Dr Lindsay Nicholson Professor Anne Dickinson Professor Andrew Filby Dr Xiao Wang et al. | Global phenotypic characterisation of human platelet lysate expanded MSCs by high-throughput flow cytometry | 2018 |
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Dr Rachel Botting Dr Emily Stephenson Dr Ben Barron-Millar Barbara Innes Dr Rebecca Payne et al. | Single-cell reconstruction of the early maternal–fetal interface in humans | 2018 |
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Dr Emily Stephenson Professor Andrew Filby Dr Steven Lisgo Emerita Professor Susan Lindsay Professor Muzlifah Haniffa et al. | Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors | 2018 |
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Dr Shalabh Srivastava Dr Simon Ramsbottom Dr Elisa Molinari Sumaya Alkanderi Professor Andrew Filby et al. | A human patient-derived cellular model of Joubert syndrome reveals ciliary defects which can be rescued with targeted therapies | 2017 |
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Professor Andrew Filby
| An open-source solution for advanced imaging flow cytometry data analysis using machine learning | 2017 |
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Professor Andrew Filby
| Caveolin-1 Influences LFA-1 Redistribution upon TCR Stimulation in CD8 T Cells | 2017 |
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Professor Andrew Filby
| Guidelines for the use of flow cytometry and cell sorting in immunological studies | 2017 |
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Professor Andrew Filby
| Reconstructing cell cycle and disease progression using deep learning | 2017 |
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Dr Gary Reynolds James Fletcher Dr Laura Jardine David Dixon Dr Emily Stephenson et al. | Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors | 2017 |
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Professor Andrew Filby
| The Analysis of Cell Cycle, Proliferation, and Asymmetric Cell Division by Imaging Flow Cytometry | 2017 |
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Professor Andrew Filby
| Frequency and Dynamics of Leukemia-Initiating Cells during Short-term Ex Vivo Culture Informs Outcomes in Acute Myeloid Leukemia Patients | 2016 |
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Professor Andrew Filby
| Label-free cell cycle analysis for high-throughput imaging flow cytometry | 2016 |
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Dr Deepali Pal Dr Helen Blair Dr Alex Elder Katie Dormon Dr Kate Rennie et al. | Long-term in vitro maintenance of clonal abundance and leukaemia-initiating potential in acute lymphoblastic leukaemia | 2016 |
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Professor Andrew Filby
| Sample preparation for flow cytometry benefits from some lateral thinking | 2016 |
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Professor Andrew Filby
| Stepwise B-cell-dependent expansion of T helper clonotypes diversifies the T-cell response | 2016 |
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Professor Andrew Filby
| An Imaging Flow Cytometry-based approach to analyse the fission yeast cell cycle in fixed cells | 2015 |
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Jaki Hodgson Professor Andrew Filby
| An imaging flow cytometry-based approach to measuring the spatiotemporal calcium mobilisation in activated T cells | 2015 |
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Professor Andrew Filby
| Appraising the suitability of succinimidyl and lipophilic fluorescent dyes to track proliferation in non-quiescent cells by dye dilution | 2015 |
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Professor Andrew Filby
| New, clear fusion from the cellular perspective: Measuring cellular fusion in Saccharomyces cerevisiae by flow cytometry | 2015 |
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Professor Andrew Filby
| "Mega" cytometry for a "mega" challenging cell type | 2014 |
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Professor Andrew Filby
| A method for evaluating the use of fluorescent dyes to track proliferation in cell lines by dye dilution | 2013 |
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Professor Andrew Filby
| Interleukins 5 and 13 characterize immune responses to respiratory sensitizing acid anhydrides | 2002 |
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