Publications by Professor Andrew Filby - ePrints

Browsing publications by Professor Andrew Filby.

Newcastle Authors	Title	Year
Dr Amy Vincent Dr Chun Chen Dr Tiago Gomes Bernardino Gomes Dr Valeria Di Leo Kamil Pabis et al.	A stagewise response to mitochondrial dysfunction in mitochondrial DNA maintenance disorders	2024
Dr Luke Milross Bethany Hunter Dr David McDonald George Merces Dr Amanda Thomson et al.	Distinct lung cell signatures define the temporal evolution of diffuse alveolar damage in fatal COVID-19	2024
Patricia Pinol Jurado Jose Verdú-Díaz Esther Fernández-Simón Dr Conor Lawless Dr Amy Vincent et al.	Imaging mass cytometry analysis of Becker muscular dystrophy muscle samples reveals different stages of muscle degeneration	2024
Bethany Hunter Ioana Nicorescu Emma Foster Dr David McDonald Dr Gill Hulme et al.	OPTIMAL: An OPTimized Imaging Mass cytometry AnaLysis framework for benchmarking segmentation and data exploration	2024
Sean Hockney Carly Knill Dr David McDonald Professor Andrew Filby Dr Deepali Pal et al.	Protocol for in vitro co-culture, proliferation, and cell cycle analyses of patient-derived leukemia cells	2024
Dr Ken Baker Dr David McDonald Dr Gill Hulme Raf Hussain Dr Jonathan Coxhead et al.	Single-cell insights into immune dysregulation in rheumatoid arthritis flare versus drug-free remission	2024
Dr Luke Milross Bethany Hunter Dr Joaquim Majo Professor Andrew Filby Professor Andrew Fisher et al.	Downregulation of MALAT1 is a hallmark of tissue and peripheral proliferative T cells in COVID-19	2023
Dr Martina Finetti Bethany Hunter Professor Andrew Filby Dr David McDonald	GBMdeconvoluteR accurately infers proportions of neoplastic and immune cell populations from bulk glioblastoma transcriptomics data	2023
Dr Dino Masic Kayleigh Fee Dr Hayden Bell Marian Case Juan Ojeda Garcia et al.	Hyperactive CREB subpopulations increase during therapy in pediatric B-lineage acute lymphoblastic leukemia	2023
Dr Luke Milross Dr Joaquim Majo Bethany Hunter Professor Andrew Filby Professor Andrew Fisher et al.	Identification of a protein expression signature distinguishing early from organising diffuse alveolar damage in COVID-19 patients	2023
Dr Chun Chen Dr David McDonald Dr Alasdair Blain Emily Mossman Kiera Atkin et al.	Parkinson’s disease neurons exhibit alterations in mitochondrial quality control proteins	2023
Jing Lim Grace Mallett Dr David McDonald Dr Gill Hulme Dr Stephanie Laba et al.	Programmed cell death-1 receptor-mediated regulation of Tbet⁺NK1.1^- innate lymphoid cells within the tumor microenvironment	2023
Dr Kathryn Musgrave Dr Jonathan Scott Dr Wezi Sendama Aaron Gardner Fiona Dewar et al.	Tissue factor expression in monocyte subsets during human immunothrombosis, endotoxemia and sepsis	2023
Dr Chun Chen Emily Mossman Dr David McDonald Dr Alasdair Blain Laura Bone et al.	Astrocytic Changes in Mitochondrial Oxidative Phosphorylation Protein Levels in Parkinson's Disease	2022
Dr Jack Leslie Erik Ramon Gil Kathryn Gilroy Dr Saimir Luli Maja Laszczewska et al.	CXCR2 inhibition enables NASH-HCC immunotherapy	2022
Dr Ugo Offor Professor Andrew Filby Dr Milos Ognjanovic Dr Gareth Parry Abbas Khushnood et al.	Defining the systemic immune landscape in children at an increased risk of posttransplant lymphoproliferative disease: The immunology of thymectomy and childhood cardiac transplant (ITHACA) study.	2022
Dan Hipps Dr Philip Dobson Dr Charlotte Warren Dr David McDonald Andrew Fuller et al.	Detecting respiratory chain defects in osteoblasts from osteoarthritic patients using imaging mass cytometry	2022
Saskia Bos Dr Luke Milross Professor Andrew Filby Professor Andrew Fisher	Immune processes in the pathogenesis of chronic lung allograft dysfunction: identifying the missing pieces of the puzzle	2022
Dr Luke Milross Dr Joaquim Majo Professor Andrew Filby Professor Andrew Fisher	Post-mortem lung tissue: the fossil record of the pathophysiology and immunopathology of severe COVID-19	2022
Dr Luke Milross Dr Joaquim Majo Bethany Hunter Dr Christopher Duncan Professor Andrew Filby et al.	The trajectory of COVID-19 cardiopulmonary disease: insights from an autopsy study of community-based, pre-hospital deaths	2022
Professor Andrew Filby	Biosafety during a pandemic: shared resource laboratories rise to the challenge	2021
Dr Laura Jardine Dr Simone Webb Issac Goh Dr Gary Reynolds Dr Michael Mather et al.	Blood and immune development in human fetal bone marrow and Down syndrome	2021
Professor Andrew Filby	Data Driven Cell Cycle Model to Quantify the Efficacy of Cancer Therapeutics Targeting Specific Cell-Cycle Phases From Flow Cytometry Results	2021
Dr Gary Reynolds Dr Peter Vegh Dr James Fletcher Dr Beth Poyner Dr Emily Stephenson et al.	Developmental cell programs are co-opted in inflammatory skin disease	2021
Dr Chun Chen Dr David McDonald Dr Alasdair Blain Dr Ashwin Sachdeva Laura Bone et al.	Imaging mass cytometry reveals generalised deficiency in OXPHOS complexes in Parkinson’s disease	2021
Dr Rachel Botting Dr Cecilia Dominguez Conde Dr Dorin-Mirel Popescu Dr Emily Stephenson Dr Simone Webb et al.	A cell atlas of human thymic development defines T cell repertoire formation	2020
Dr Charlotte Warren Dr David McDonald Professor David Deehan Professor Robert Taylor Professor Andrew Filby et al.	Decoding mitochondrial heterogeneity in single muscle fibres by imaging mass cytometry	2020
Dr Urszula Cytlak-Chaudhuri Dr Anastasia Resteu Sarah Pagan Dr Kile Green Dr Paul Milne et al.	Differential IRF8 Transcription Factor Requirement Defines Two Pathways of Dendritic Cell Development in Humans	2020
Marian Case Dr Dino Masic Dr David Jamieson Dr Frederik van Delft Professor Andrew Filby et al.	Label-Free Leukemia Monitoring by Computer Vision	2020
Rebecca Maier Dr Bilal Bawamia Dr Karim Bennaceur Sarah Dunn Dr Leanne Marsay et al.	Telomerase activation to reverse immunosenescence in elderly patients with acute coronary syndrome: Protocol for a randomized pilot trial	2020
Carly Knill Andrew Fuller Dr Louise Michaelis Professor Andrew Filby	Classification of Human White Blood Cells Using Machine Learning for Stain-Free Imaging Flow Cytometry	2019
Professor Andrew Filby	Cyt-Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2018 Conference Workshops	2019
Dr Dorin-Mirel Popescu Dr Rachel Botting Dr Emily Stephenson Dr Kile Green Dr Simone Webb et al.	Decoding human fetal liver haematopoiesis	2019
Professor Andrew Filby	Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition)	2019
Professor Andrew Filby	Label-Free Identification of White Blood Cells Using Machine Learning	2019
Dr Laura Jardine Dr Sarah Wiscombe Dr Gary Reynolds Dr David McDonald Andrew Fuller et al.	Lipopolysaccharide inhalation recruits monocytes and dendritic cell subsets to the alveolar airspace.	2019
Dr Rachel Botting Dr Dorin-Mirel Popescu Dr Roser Vento-Tormo Emily Stephenson Dr Kile Green et al.	Spatiotemporal immune zonation of the human kidney	2019
Dr David McDonald Dr Lindsay Nicholson Professor Anne Dickinson Professor Andrew Filby Dr Xiao Wang et al.	Global phenotypic characterisation of human platelet lysate expanded MSCs by high-throughput flow cytometry	2018
Dr Rachel Botting Dr Emily Stephenson Dr Ben Barron-Millar Barbara Innes Dr Rebecca Payne et al.	Single-cell reconstruction of the early maternal–fetal interface in humans	2018
Dr Emily Stephenson Professor Andrew Filby Dr Steven Lisgo Emerita Professor Susan Lindsay Professor Muzlifah Haniffa et al.	Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors	2018
Dr Shalabh Srivastava Dr Simon Ramsbottom Dr Elisa Molinari Sumaya Alkanderi Professor Andrew Filby et al.	A human patient-derived cellular model of Joubert syndrome reveals ciliary defects which can be rescued with targeted therapies	2017
Professor Andrew Filby	An open-source solution for advanced imaging flow cytometry data analysis using machine learning	2017
Professor Andrew Filby	Caveolin-1 Influences LFA-1 Redistribution upon TCR Stimulation in CD8 T Cells	2017
Professor Andrew Filby	Guidelines for the use of flow cytometry and cell sorting in immunological studies	2017
Professor Andrew Filby	Reconstructing cell cycle and disease progression using deep learning	2017
Dr Gary Reynolds James Fletcher Dr Laura Jardine David Dixon Dr Emily Stephenson et al.	Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors	2017
Professor Andrew Filby	The Analysis of Cell Cycle, Proliferation, and Asymmetric Cell Division by Imaging Flow Cytometry	2017
Professor Andrew Filby	Frequency and Dynamics of Leukemia-Initiating Cells during Short-term Ex Vivo Culture Informs Outcomes in Acute Myeloid Leukemia Patients	2016
Professor Andrew Filby	Label-free cell cycle analysis for high-throughput imaging flow cytometry	2016
Dr Deepali Pal Dr Helen Blair Dr Alex Elder Katie Dormon Dr Kate Rennie et al.	Long-term in vitro maintenance of clonal abundance and leukaemia-initiating potential in acute lymphoblastic leukaemia	2016
Professor Andrew Filby	Sample preparation for flow cytometry benefits from some lateral thinking	2016
Professor Andrew Filby	Stepwise B-cell-dependent expansion of T helper clonotypes diversifies the T-cell response	2016
Professor Andrew Filby	An Imaging Flow Cytometry-based approach to analyse the fission yeast cell cycle in fixed cells	2015
Jaki Hodgson Professor Andrew Filby	An imaging flow cytometry-based approach to measuring the spatiotemporal calcium mobilisation in activated T cells	2015
Professor Andrew Filby	Appraising the suitability of succinimidyl and lipophilic fluorescent dyes to track proliferation in non-quiescent cells by dye dilution	2015
Professor Andrew Filby	New, clear fusion from the cellular perspective: Measuring cellular fusion in Saccharomyces cerevisiae by flow cytometry	2015
Professor Andrew Filby	"Mega" cytometry for a "mega" challenging cell type	2014
Professor Andrew Filby	A method for evaluating the use of fluorescent dyes to track proliferation in cell lines by dye dilution	2013
Professor Andrew Filby	Interleukins 5 and 13 characterize immune responses to respiratory sensitizing acid anhydrides	2002