Publications by Dr Colin Gillespie - ePrints

Browsing publications by Dr Colin Gillespie.

Newcastle Authors	Title	Year
Dr Dennis Prangle Sophie Harbisher Dr Colin Gillespie	Bayesian Experimental Design Without Posterior Calculations: An Adversarial Approach	2023
Amar Rajgor Dr Christopher Kui Josh Cowley Dr Colin Gillespie Professor Aileen Mill et al.	CT-based radiomic markers are independent prognosticators of survival in advanced laryngeal cancer: A pilot study.	2023
Amar Rajgor Josh Cowley Dr Colin Gillespie Dr Chang Lee James O'Hara et al.	Outcomes of the contemporary management approach for locally advanced (T3-T4) laryngeal cancer: a retrospective cohort study.	2022
Dr Holly Fisher Dr Colin Gillespie Dr Andrew Golightly	Parameter inference for a stochastic kinetic model of expanded polyglutamine proteins	2022
Dr Colin Gillespie Professor Darren Wilkinson Dr Allyson Lister Dr Carole Proctor	SBML Level 3: an extensible format for the exchange and reuse of biological models	2020
Dr Colin Gillespie Professor Darren Wilkinson	Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1	2020
Dr Hannah Paish Dr Colin Gillespie Alicia Del Carpio Pons Professor Derek Mann Professor David Deehan et al.	Chronic, Active Inflammation in Patients with Failed Total Knee Replacements Undergoing Revision Surgery	2019
Dr Andrew Golightly Dr Tom Lowe Dr Colin Gillespie	Correlated pseudo-marginal schemes for time-discretised stochastic kinetic models	2019
Dr Colin Gillespie Professor Richard Boys	Efficient construction of Bayes optimal designs for stochastic process models	2019
Dr Colin Gillespie	Extension of the gambin model to multimodal species abundance distributions	2019
Dr Colin Gillespie Dr Andrew Golightly	Guided proposals for efficient weighted stochastic simulation	2019
Professor Richard Boys Dr Colin Gillespie	Bayesian inference for a partially observed birth-death process using data on proportions	2018
Dr Katherine James Dr Simon Cockell Dr Colin Gillespie Dr Jennifer Hallinan Dr Francesca Barone et al.	B-cell activity markers are associated with different disease activity domains in primary Sjögren's syndrome	2018
Ayman Albanna Martin Sim Dr Colin Gillespie Dr Phillip Aldridge	Driving the expression of the Salmonella enterica sv Typhimurium flagellum using flhDC from Escherichia coli results in key regulatory and cellular differences	2018
Dr Colin Gillespie	Estimating the number of casualties in the American Indian war: a Bayesian analysis using the power law distribution	2017
Dr Martin Sim David Picton Dr Henrik Strahl von Schulten Dr Colin Gillespie Dr Phillip Aldridge et al.	Growth rate control of flagellar assembly in Escherichai coli strain RP437	2017
Anders Andreasson Danai Karamanou Dr Colin Gillespie Kasim Jiwa Dr Nicola Green et al.	Profiling inflammation and tissue injury markers in perfusate and bronchoalveolar lavage fluid during human ex vivo lung perfusion	2017
Anders Andreasson Dr Lee Borthwick Dr Colin Gillespie Kasim Jiwa Jonathan Scott et al.	The role of interleukin-1β as a predictive biomarker and potential therapeutic target during clinical ex vivo lung perfusion	2017
Dr Lee Borthwick Wona Suwara Dr Sonya Carnell Dr Nicola Green Dr Rahul Mahida et al.	Pseudomonas aeruginosa induced Airway Epithelial Injury Drives Fibroblast Activation: A Mechanism in Chronic Lung Allograft Dysfunction	2016
Dr Nadia Howard-Tripp Dr Jessica Tarn Dr Colin Gillespie Dr Dennis Lendrem Dr Bridget Griffiths et al.	A Cytokine-Mediated Biological Basis for Fatigue in Primary Sjögren’s Syndrome	2016
Dr Colin Gillespie Dr Andrew Golightly	Diagnostics for assessing the linear noise and moment closure approximations	2016
Dr Anders Andreasson Danai Karamanou Dr Colin Gillespie Dr Lee Borthwick Kasim Jiwa et al.	Treating Donor Lung Inflammation by Blocking Interleukin-1B-An In Vitro Therapy Testing Platform for Ex Vivo Lung Perfusion	2016
Dr Katherine James Shereen Al-Ali Dr Jessica Tarn Dr Simon Cockell Dr Colin Gillespie et al.	A Transcriptional Signature of Fatigue Derived from Patients with Primary Sjögren’s Syndrome	2015
Jessica Tarn Dr Simon Cockell Dr Colin Gillespie Emerita Professor Julia Newton Professor Anil Wipat et al.	A Transcriptional Signature of Fatigue Derived from Patients with Primary Sjögren's Syndrome	2015
Dr Colin Gillespie	Fitting Heavy Tailed Distributions: The poweRlaw Package	2015
Shereen Al-Ali Dr Jessica Tarn Dr Simon Cockell Dr Colin Gillespie Professor John Isaacs et al.	Gene Set Enrichment Analysis Across Multiple Expression Studies Reveals a Core Subset of Primary Sjögren's Syndrome-Related Genes	2015
Jamie Owen Professor Darren Wilkinson Dr Colin Gillespie	Likelihood free inference for Markov processes: a comparison	2015
Dr Jessica Tarn Dr Dennis Lendrem Dr Colin Gillespie Shereen Al-Ali Dr Bridget Griffiths et al.	Patient Sub-Phenotyping in Primary Sjogren's Syndrome	2015
Jamie Owen Professor Darren Wilkinson Dr Colin Gillespie	Scalable inference for Markov processes with intractable likelihoods	2015
Dr Simon Cockell Dr Colin Gillespie Professor Fai Ng	Serum Free Light Chains are Associated with Clinical Disease Activity of Primary Sjögren's Syndrome in the Cutaneous, Biological and Renal Domains	2015
Dr Simon Cockell Dr Colin Gillespie Professor Fai Ng	Baff and B2m, but not Free Light Chains, Correlate with Disease Activity in Primary Sjögren's Syndrome (PSS)	2014
Dr Andrew Golightly Dr Colin Gillespie	Bayesian inference for hybrid discrete-continuous stochastic kinetic models	2014
Dr Simon Cockell Dr Matthew Bashton Dr Colin Gillespie	Bioconductor tools for microarray data analysis	2014
Peter Milner Dr Colin Gillespie Professor Darren Wilkinson	Moment closure based parameter inference of stochastic kinetic models	2013
Dr Andrew Golightly Dr Colin Gillespie	Simulation of stochastic kinetic models	2013
Dr Conor Lawless Dr Diana Jurk Dr Colin Gillespie Dr Daryl Shanley Dr Gabriele Saretzki et al.	A Stochastic Step Model of Replicative Senescence Explains ROS Production Rate in Ageing Cell Populations	2012
Dr Michael Bell Dr Colin Gillespie Dr Phillip Lord	An approach to describing and analysing bulk annotation quality: a case study using UniprotKB	2012
Dr Michael Bell Dr Colin Gillespie Dr Phillip Lord	An approach to describing and analysing bulk biological annotation quality: A case study using UniProtKB	2012
Dr Colin Gillespie Dr Andrew Golightly	Bayesian inference for the chemical master equation using approximate models	2012
Dr Colin Gillespie	Stochastic simulation of chemically reacting systems using multi-core processors	2012
Dr Guiyuan Lei Professor Richard Boys Dr Colin Gillespie Dr Amanda Greenall Professor Darren Wilkinson et al.	Bayesian inference for sparse VAR(1) models, with application to time course microarray data	2011
Dr Susanne Pohl Dr Phillip Aldridge Dr Colin Gillespie Dr Ulrike Mader Professor Colin Harwood et al.	Combined proteomic and transcriptomic analysis of the response of Bacillus anthracis to oxidative stress	2011
Dr Colin Gillespie Professor Darren Wilkinson	Moment closure approximations for stochastic kinetic models with rational rate laws	2011
Dr Gary Caldwell Susan Fitzer Dr Colin Gillespie Emeritus Professor Matt Bentley	Ocean acidification takes sperm back in time	2011
Dr Rebecca Wockenforth Dr Colin Gillespie Bruce Jaffray	Survival of children following Nissen fundoplication	2011
Dr Colin Gillespie	Ten Simple Rules for Getting Help from Online Scientific Communities	2011
Dr Colin Gillespie Dr Guiyuan Lei Professor Richard Boys Dr Amanda Greenall Professor Darren Wilkinson et al.	Analysing time course microarray data using Bioconductor: a case study using yeast2 Affymetrix arrays	2010
Dr Colin Gillespie Dr Andrew Golightly	Bayesian inference for generalized stochastic population growth models with application to aphids	2010
Dr Yuhui Chen Dr Conor Lawless Dr Colin Gillespie Professor Jingyi Wu Professor Richard Boys et al.	CaliBayes and BASIS: integrated tools for the calibration, simulation and storage of biological simulation models	2010
Dr Colin Gillespie	Moment-closure approximations for mass-action models	2009
Dr Min Hong Professor Andrew Gennery Professor Andrew Cant Dr Mario Abinun Professor David Young et al.	Pattern recognition receptor expression is not impaired in patients with chronic mucocutanous candidiasis with or without autoimmune polyendocrinopathy candidiasis ectodermal dystrophy	2009
Dr Colin Gillespie	The evolution of a single-paired immigration death process	2008
Dr Colin Gillespie Professor Darren Wilkinson	The SBML discrete stochastic models test suite	2008
Dr Colin Gillespie	An improved saddlepoint approximation	2007
Dr Carole Proctor Professor David Lydall Professor Richard Boys Dr Colin Gillespie Dr Daryl Shanley et al.	Modelling the checkpoint response to telomere uncapping in budding yeast	2007
Dr Colin Gillespie Professor Darren Wilkinson Dr Daryl Shanley Dr Carole Proctor Professor Richard Boys et al.	BASIS: an internet resource for network modelling.	2006
Emeritus Professor Thomas Kirkwood Professor Richard Boys Dr Colin Gillespie Dr John Proctor Dr Daryl Shanley et al.	Computer modeling in the study of aging	2006
Dr Colin Gillespie Professor Darren Wilkinson Dr Carole Proctor Dr Daryl Shanley Professor Richard Boys et al.	Tools for the SBML community	2006
Emeritus Professor Thomas Kirkwood Professor Richard Boys Dr Colin Gillespie Dr John Proctor Dr Daryl Shanley et al.	Computer Modeling in the Study of Aging	2005
Dr Carole Proctor Professor Richard Boys Dr Colin Gillespie Dr Daryl Shanley Professor Darren Wilkinson et al.	Modelling the actions of chaperones and their role in ageing	2005
Dr Colin Gillespie	The evolution of a batch-immigration death process subject to counts	2005
Dr Colin Gillespie Dr Carole Proctor Dr Daryl Shanley Professor Darren Wilkinson Professor Richard Boys et al.	Web-services for the biology community: the BASIS project	2005
Dr Colin Gillespie Dr Carole Proctor Professor Richard Boys Dr Daryl Shanley Professor Darren Wilkinson et al.	A mathematical model of ageing in yeast	2004
Emeritus Professor Thomas Kirkwood Professor Richard Boys Dr Colin Gillespie Dr Carole Proctor Dr Daryl Shanley et al.	Towards an e-biology of ageing: Integrating theory and data	2003